What databases does the InterPro skill include?

It integrates signatures from 13 member databases, including Pfam, PANTHER, PRINTS, ProSite, SMART, TIGRFAM, SUPERFAMILY, CDD, and others.

Does this require a subscription to EMBL-EBI?

No, it utilizes the public InterPro REST API, though users should adhere to EMBL-EBI's fair use policies for API access.

How does this skill help with protein function prediction?

It allows Claude to query specific protein accessions or domain IDs to find known functional associations, family classifications, and Gene Ontology terms.

Can I use this skill for batch analysis?

Yes, the skill includes patterns for batch protein lookups with built-in rate limiting to handle multiple UniProt identifiers effectively.

InterPro Protein Database

Name: InterPro Protein Database
Author: Yezez9

byYezez9

0•

数据科学与机器学习

Queries the EMBL-EBI InterPro resource for comprehensive protein family, domain, and functional site annotations.

The InterPro Database skill empowers Claude to conduct advanced bioinformatics research by interfacing with the EMBL-EBI InterPro REST API. It provides a unified portal to 13 member databases, including Pfam, PANTHER, and SMART, allowing for precise protein function prediction, domain architecture analysis, and Gene Ontology (GO) term mapping. Whether characterizing unknown sequences or conducting large-scale evolutionary analysis, this skill streamlines the retrieval of structured biological data for researchers and developers working in life sciences.

主要功能

01Automated Gene Ontology (GO) term retrieval and mapping

020 GitHub stars

03Direct REST API integration for real-time protein functional annotation

04Support for batch protein lookups and taxonomy-based searches

05Comprehensive protein domain architecture and structural repeat mapping

06Integrated access to 13 member databases like Pfam, PANTHER, and SMART

使用场景

01Conducting comparative domain analysis across different protein families or species

02Predicting biological functions and domain layouts for uncharacterized protein sequences

03Automating the annotation of novel proteomes within a data science pipeline

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add yezez9/research-agent interpro-database

For use in Claude.ai and ChatGPT

主要功能

01Automated Gene Ontology (GO) term retrieval and mapping

020 GitHub stars

03Direct REST API integration for real-time protein functional annotation

04Support for batch protein lookups and taxonomy-based searches

05Comprehensive protein domain architecture and structural repeat mapping

06Integrated access to 13 member databases like Pfam, PANTHER, and SMART

使用场景

01Conducting comparative domain analysis across different protein families or species

02Predicting biological functions and domain layouts for uncharacterized protein sequences

03Automating the annotation of novel proteomes within a data science pipeline

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add yezez9/research-agent interpro-database

For use in Claude.ai and ChatGPT