Can I retrieve protein or nucleotide sequences?

Yes, the skill can fetch sequences in FASTA format using the 'aaseq' (amino acid) or 'ntseq' (nucleotide) parameters.

Is the KEGG Database skill free for commercial use?

No, the KEGG REST API is provided for academic use only. Commercial organizations require a license from Pathway Solutions for use.

What organisms are supported by this skill?

The skill supports thousands of organisms included in the KEGG genome database, using standard codes like 'hsa' for humans, 'mmu' for mice, and 'eco' for E. coli.

How do I convert external IDs to KEGG IDs?

You can use the built-in kegg_conv function to map identifiers between KEGG and databases like UniProt, NCBI-GeneID, or PubChem.

KEGG Database Pathway Analysis

Name: KEGG Database Pathway Analysis
Author: lifangda

bylifangda

•

数据科学与机器学习

Accesses the KEGG REST API to perform biological pathway analysis, gene-pathway mapping, and metabolic network research.

This skill provides direct access to the Kyoto Encyclopedia of Genes and Genomes (KEGG) for advanced bioinformatics workflows. It enables researchers to query complex biological data including pathways, genes, enzymes, and drug interactions across thousands of organisms. Designed for academic use, the skill streamlines tasks such as ID conversion between KEGG and external databases (NCBI, UniProt, PubChem), pathway enrichment analysis, and the retrieval of molecular structures or sequences, allowing for seamless integration of biological intelligence into automated Python workflows.

主要功能

01Cross-database ID conversion for NCBI GeneID, UniProt, and PubChem

02Keyword searching for genes, compounds, and drugs by formula or mass

0316 GitHub stars

04Direct REST API access to KEGG databases including Pathway, Brite, and Genes

05High-resolution pathway image retrieval and KGML/JSON data extraction

06Drug-drug interaction (DDI) checking and pharmacological network analysis

使用场景

01Integrating genomic data from external databases with KEGG functional annotations

02Mapping experimental gene lists to biological pathways for enrichment analysis

03Analyzing metabolic networks and compound-reaction relationships for drug discovery

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add lifangda/claude-plugins kegg-database

For use in Claude.ai and ChatGPT

Download Skill