What is the Latch Registry?

The Latch Registry is a structured data management system that this skill helps you navigate to organize samples, tables, and records for experiment traceability.

Can I use my existing Nextflow scripts?

Yes, this skill includes documentation and patterns for integrating and deploying existing Nextflow and Snakemake pipelines onto the Latch platform.

How does this skill help with bioinformatics?

It provides Claude with the specialized context needed to write Latch SDK code, define tasks, and configure cloud resources specifically for biological data processing.

Does it support GPU acceleration?

Absolutely. It covers the configuration of @large_gpu_task and @small_gpu_task decorators, supporting hardware like V100 and A100 GPUs for intensive tasks.

LatchBio Bioinformatics Integration

Name: LatchBio Bioinformatics Integration
Author: Microck

byMicrock

•

数据科学与机器学习

Simplifies the development, deployment, and management of serverless bioinformatics workflows using the Latch SDK and cloud infrastructure.

关于

This skill empowers developers to build production-grade bioinformatics pipelines by providing domain-specific guidance for the Latch platform. It streamlines the creation of serverless workflows using Flyte-based decorators, handles complex data management via LatchFile and LatchDir abstractions, and optimizes resource allocation for high-compute tasks including GPU-accelerated analysis. Whether you are migrating existing Nextflow/Snakemake pipelines or building native Python workflows, this integration provides the patterns and best practices needed to orchestrate biological data at scale within the Latch ecosystem.

主要功能

Seamless integration for Nextflow and Snakemake pipeline migration
Integrated cloud data management with LatchFile and LatchDir abstractions
Granular resource configuration for CPU and GPU (A100/V100) workloads
Data organization and tracking using the Latch Registry system
81 GitHub stars
Serverless workflow orchestration via @workflow and @task decorators

使用场景

Automating RNA-seq and differential expression analysis pipelines
Deploying GPU-intensive protein folding models like AlphaFold
Managing and versioning sequencing data within the Latch ecosystem

关于

主要功能

Seamless integration for Nextflow and Snakemake pipeline migration
Integrated cloud data management with LatchFile and LatchDir abstractions
Granular resource configuration for CPU and GPU (A100/V100) workloads
Data organization and tracking using the Latch Registry system
81 GitHub stars
Serverless workflow orchestration via @workflow and @task decorators

使用场景

Automating RNA-seq and differential expression analysis pipelines
Deploying GPU-intensive protein folding models like AlphaFold
Managing and versioning sequencing data within the Latch ecosystem