What data formats can I retrieve using this skill?

The skill supports various formats including JSON for programmatic use, XML for detailed metadata, and FASTA or GenBank for sequence-related tasks.

Does this skill require an NCBI API key?

While not strictly required, registering for a free NCBI API key is recommended as it increases the rate limit from 3-5 requests per second to 10 requests per second.

What organisms are supported by the Gene Database skill?

It supports all organisms cataloged in the NCBI Gene database, including humans, mice, zebrafish, and other model organisms.

Can I perform batch lookups for multiple genes at once?

Yes, the skill includes a dedicated batch lookup script designed to process lists of gene symbols or IDs efficiently while managing API limits.

NCBI Gene Database Integration

Name: NCBI Gene Database Integration
Author: Microck

byMicrock

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数据科学与机器学习

Queries the NCBI Gene database to retrieve comprehensive genetic information, metadata, and sequences for annotation and functional analysis.

This skill empowers Claude to interact directly with the NCBI Gene database via E-utilities and the Datasets API, providing a streamlined interface for genomic research and bioinformatics. It enables users to search for genes by symbol or ID, retrieve detailed biological metadata including Gene Ontology (GO) terms and phenotypes, and fetch reference sequences (RefSeqs). Designed for both individual queries and high-throughput batch lookups, the skill handles complex API interactions, rate limiting, and multi-format data parsing, making it an essential tool for developers and scientists working on gene annotation, pathway analysis, or genomic data processing.

主要功能

01Comprehensive metadata retrieval including chromosomal maps and GO annotations

02Automated batch processing for large gene lists with rate limit management

03Pre-configured scripts for rapid gene search, data fetching, and batch lookups

04Dual API support for NCBI E-utilities and the newer NCBI Datasets API

05Support for multiple output formats including JSON, XML, GenBank, and FASTA

0681 GitHub stars

使用场景

01Automated annotation of genomic datasets with official nomenclature and identifiers

02Batch cross-referencing of gene lists for functional enrichment and pathway analysis

03Retrieving reference sequences (RefSeqs) for specific gene panels in research workflows

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add microck/ordinary-claude-skills gene-database

For use in Claude.ai and ChatGPT

Download Skill