What is the difference between findings and synthesis in this skill?

To maintain scientific rigor, 'Findings' are restricted to factual observations and measurements, while 'Synthesis' is reserved for AI-guided interpretation and connecting those facts to the research hypothesis.

Can I customize the report structure?

While it follows a standardized scientific structure for consistency, you can use the /research-refine command to tailor sections and focus on specific research objectives.

How does the skill ensure data integrity in reports?

The skill utilizes a mandatory pre-generation checklist that verifies notebook completeness, figure paths, and statistical evidence before synthesizing any data into the final report.

Does it support Jupyter notebooks?

Yes, the skill can extract content from both Jupyter (.ipynb) and Markdown (.md) lab notebooks to create an integrated analysis.

Can I export reports to PDF format?

Yes, the skill includes a shell script that leverages Pandoc and Typst to convert Markdown reports into professionally formatted PDF documents.

Scientific Experiment Reporter

Name: Scientific Experiment Reporter
Author: dakesan

bydakesan

数据科学与机器学习

Generates and refines structured scientific reports from bioinformatics lab notebooks with integrated figure support and professional PDF export.

关于

The Experiment Report skill automates the synthesis of multiple experimental notebooks into cohesive, publication-ready reports. Designed specifically for bioinformatics workflows, it handles the mechanical extraction of results from Jupyter and Markdown notebooks while enforcing scientific rigor by separating factual observations from analytical interpretations. The skill provides AI-guided refinement for clarity, manages figure integration with proper referencing, and includes a specialized export pipeline using Pandoc and Typst to produce professional-grade PDF documentation.

主要功能

Automated synthesis of integrated reports from multiple lab notebooks
Professional PDF export capabilities using Pandoc and Typst templates
AI-guided refinement focusing on scientific rigor, logical flow, and clarity
Structured figure management with automated path verification and captions
0 GitHub stars
Fact-interpretation separation mapping to ensure evidence-based reporting

使用场景

Consolidating multiple sequencing experiment logs into a cohesive milestone report
Converting Markdown-based bioinformatics workflows into formatted PDF reports for archiving
Polishing draft research summaries for scientific accuracy before stakeholder review

关于

主要功能

Automated synthesis of integrated reports from multiple lab notebooks
Professional PDF export capabilities using Pandoc and Typst templates
AI-guided refinement focusing on scientific rigor, logical flow, and clarity
Structured figure management with automated path verification and captions
0 GitHub stars
Fact-interpretation separation mapping to ensure evidence-based reporting

使用场景

Consolidating multiple sequencing experiment logs into a cohesive milestone report
Converting Markdown-based bioinformatics workflows into formatted PDF reports for archiving
Polishing draft research summaries for scientific accuracy before stakeholder review