Phd Thesis Stage 2 Research Design
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Productivity & Workflow
Option 2 of 3 · PhD Stage 2: turn your research into a verified argument, a methodology to prove it and a chapter plan.
OPTION 2 OF 3 · PhD STAGE 2: RESEARCH DESIGN & CITATION VERIFIER
Bring your existing research (bibliography, proposal, drafts, notes) or the outputs of Stage 1. Get back a research design you can defend and references you can trust.
WHAT YOU GET
• One verified evidence base: all your sources merged, de-duplicated and mapped to your research questions.
• Citation verification: checks every reference is real and supports the sentence it is cited for; flags invented, mismatched and orphaned references and fixes links and DOIs (in a copy of your Word file or Google Doc, if you ask).
• Argument map: your thesis statement, the claims for each research question and the evidence for and against them.
• Methodology to prove each argument: design, sampling, instruments, analysis, validity and ethics, summarised in a research design matrix (question → claim → evidence → method → data → analysis → chapter).
• Proposed chapters with aims, sections, sources and word counts, plus a timeline, risk register and a one-page supervisor brief.
BUILT FOR RESEARCH INTEGRITY
• Offers options; you decide. Never presents a gap as proof that nothing exists.
• Uses the literature databases connected to your Claude, and remembers your decisions across chats.
• Works with Word, Excel and Google Docs/Sheets, and on the free Claude plan.
A RESEARCH BRAIN THAT GROWS WITH YOUR PHD
On first use it installs a research wiki (only if you don't have one yet): linked pages for every source, concept and research question, an index, a dated log and regular health checks for contradictions and gaps. Every new paper updates the related pages, so your knowledge compounds across chats, in Google Drive, as files, or as a single file on the free plan.
WRITES IN YOUR LANGUAGE
At the start it asks which language your thesis is written in (e.g. English, Greek, Spanish, German, French, Italian) and follows that language's academic conventions. A built-in glossary links every key term to the language it originates from (e.g. Ancient Greek, Latin, German), with definitions and sources, so your terminology stays precise and consistent.
THE THREE OPTIONS (see all: https://mcpmarket.com/sellers/phd-workflow-research-writing)
1 of 3 · Stage 1: Literature Database & Review ($29)
https://mcpmarket.com/tools/skills/mp-phd-literature-database-f40fb609
2 of 3 · Stage 2: Research Design & Citation Verifier ($49)
https://mcpmarket.com/tools/skills/mp-phd-citation-verifier-76c48bdc
3 of 3 · Complete bundle ($89, best value): options 1 and 2 in full (worth $78) plus guided drafting: chapter drafts built only from your verified sources, with every gap you must fill clearly marked.
https://mcpmarket.com/tools/skills/mp-phd-research-preflight-0a1bc734
Website: https://phd-thesis-workflow.polsia.io/
Created by academics, then tested and refined with their doctoral students, who now use it as standard practice in their research. All earnings are donated to support student AI research at a university research institute.
Key Features
01Merges your existing research with Stage 1 outputs into one evidence base
02Verifies every citation: real, accurate and supporting its sentence
03Fixes broken links and DOIs; flags invented and orphaned references
04Argument map with evidence for and against each claim
05Methodology and research design matrix to prove each argument
06Chapter plan, timeline, risk register and supervisor brief
Use Cases
01Turning a literature review into a research proposal
02Choosing and justifying a methodology
03Planning thesis chapters before writing
04Checking citations before a progress review or submission
05Preparing for a supervisor meeting or annual review
06Rescuing a stalled thesis with a clear plan
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PhD Workflow, Research & Writing
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Created by academics, then tested and refined with their doctoral students, who now use it as standard practice in their research. AI research instruments in three stages: (1) a verified literature database and review, (2) research design and citation verification, (3) the complete bundle. Never invents a source; every citation is checked. A research wiki remembers your project across chats, in your language, on any Claude plan. You stay in control of your research.
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