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ATAC-seq Footprint Analysis

Performs transcription factor footprinting and differential binding detection on ATAC-seq data using the TOBIAS framework.

Hi-C Loop Calling

Identifies and calls chromatin loops from Hi-C data files in .mcool, .cool, or .hic formats for genomic visualization and analysis.

Skill Evaluation and Improvement

Assesses, analyzes, and improves the quality, performance, and compliance of other Claude Code Skills.

Shared Patterns

Provides reusable patterns and templates for developing consistent Claude Code skills and hooks.

Claude Code Skills

Facilitates the creation and optimization of specialized capabilities for Claude Code through standardized architecture and development workflows.

JIRA Story Point Estimator

Automates story point estimation for JIRA tickets by analyzing technical complexity and benchmarking against historical team data.

Quest Keeper Master Orchestration

Orchestrates the development of the Quest Keeper AI ecosystem by coordinating the Tauri frontend, RPG-MCP backend, and project documentation.

JIRA Ticket Hygiene

Validates JIRA tickets against team standards to ensure they are well-defined and ready for development.

HyperFleet Architecture

Accesses and interprets the official HyperFleet architecture documentation to provide authoritative guidance on design patterns, versioning, and system principles.

OS Default File Opener

Opens and previews local files using the operating system's native default applications for seamless document and asset viewing.

Spec-to-Implementation for Notion

Converts project specifications into structured implementation plans and actionable task databases within Notion.

Designing Claude Skills

Guides the creation, review, and optimization of specialized Claude Code skills through best practices, design patterns, and efficient resource management.

File Categorization

Automatically classifies repository files into commands, agents, skills, and documentation using structure and content analysis.

Swarm Orchestration

Orchestrates multi-agent AI swarms for parallel task execution and dynamic coordination using the agentic-flow framework.

Risk of Bias Assessment

Evaluates methodological quality and potential bias in research studies using standardized frameworks like RoB 2 and ROBINS-I.

Babashka File System Utilities

Simplifies cross-platform file system operations and path manipulations for Clojure and Babashka environments.

GitHub Workflow Automation

Automates GitHub Actions workflows and CI/CD pipelines using AI swarm coordination for intelligent, self-organizing repository management.

Product Management Workflow Router

Orchestrates end-to-end product management tasks including specification writing, research synthesis, and roadmap prioritization.

Branch Analysis & Insights

Extracts key findings, decisions, and technical lessons from divergent Git branches by analyzing iteration journals.

Analytical SQL Writing

Guides systematic SQL query development for data analysis, ensuring accuracy and reproducibility through a structured five-phase process.

Design Principles Mastery

Applies fundamental visual design laws and Gestalt psychology to create professional, intuitive, and balanced user interfaces.

Data Profiler & Explorer

Automates systematic data profiling and exploration across multiple SQL database dialects.

Comparing Branches

Compares two autonomy branches to evaluate divergent technical approaches, metrics, and experimental outcomes.

NPM Package Suggestion Engine

Provides instant npm package name suggestions and autocompletion using the NPMS.io API.

Autonomy Goal Creator

Establishes a structured framework for tracking and optimizing long-term, open-ended objectives within your project.

Skill Creator

Provides a standardized framework and guidance for developing, optimizing, and deploying custom Claude Code Skills.

Code Review Assistant

Automates pull request reviews using a multi-agent swarm to provide specialized feedback on security, performance, and code quality.

Apple Human Interface Guidelines Expert

Implements and validates UI designs according to Apple's official Human Interface Guidelines across iOS, macOS, watchOS, and tvOS.

Side Fork

Parallelizes Claude sessions by forking the current conversation into a new tmux or screen window for experimental branching.

Autonomy Worktree Cleanup

Safely removes specialized autonomy worktree directories while preserving git branches and commit history.