Browse All Agent Skills

Scikit-learn Machine Learning

Implements professional machine learning workflows in Python using scikit-learn for classification, regression, clustering, and data preprocessing.

Zarr Python Scientific Data

Manage large-scale N-dimensional arrays with chunking, compression, and cloud-native storage for scientific computing workflows.

GEO Database Explorer

Accesses and analyzes functional genomics data from the NCBI Gene Expression Omnibus (GEO) repository.

OMERO Microscopy Integration

Manages microscopy data and metadata via the OMERO Python API for scientific imaging and high-content screening workflows.

TorchDrug Molecular Science

Accelerates drug discovery and molecular research using graph neural networks and PyTorch-based machine learning.

Molfeat Molecular Featurization

Converts chemical structures into high-quality numerical features for molecular machine learning and cheminformatics tasks.

NCBI Gene Database Explorer

Queries and retrieves comprehensive gene information from NCBI databases for genomic research and functional analysis.

Single-Cell Omics Analysis (scvi-tools)

Analyzes single-cell omics data using deep generative models for batch correction, multimodal integration, and differential expression.

AnnData Scientific Data Management

Manages annotated data matrices for single-cell genomics and large-scale biological datasets using the AnnData Python framework.

ToolUniverse Scientific Research Skill

Empowers AI agents to conduct scientific research by providing standardized access to over 600 bioinformatics, cheminformatics, and genomics tools.

PathML Pathology Toolkit

Analyzes whole-slide pathology images and multiparametric imaging data using a comprehensive computational pathology toolkit.

Scikit-bio Bioinformatics Toolkit

Analyzes biological data including sequences, phylogenetic trees, and microbial community diversity using the scikit-bio Python library.

Polars Data Analysis

Accelerates data processing and analysis using the high-performance Polars DataFrame library for Python and Rust.

Perplexity Scientific Search

Performs real-time, AI-powered web searches and scientific literature discovery using Perplexity models via OpenRouter.

GWAS Catalog Explorer

Queries the NHGRI-EBI GWAS Catalog to retrieve genetic variant associations, study metadata, and comprehensive summary statistics for genomic research.

ChEMBL Bioactive Database

Queries the ChEMBL database for bioactive molecules, drug targets, and medicinal chemistry data to support drug discovery research.

PyLabRobot Lab Automation

Automates laboratory workflows and hardware control using a hardware-agnostic Python interface for liquid handlers and analytical equipment.

PyDESeq2 Bioinformatics Analysis

Performs differential gene expression analysis on bulk RNA-seq data using the DESeq2 framework within Python.

Kosmos E2E Testing Suite

Automates comprehensive end-to-end testing for the Kosmos autonomous AI scientist project across local and cloud LLM providers.

Performance Optimization Patterns

Implements high-performance coding patterns, caching strategies, and database query optimizations to reduce latency and improve scalability.

Common Failure Patterns & Troubleshooting

Diagnoses and resolves recurring software failure patterns across dependencies, environments, networking, and concurrency.

NetworkX Graph Analysis

Builds, analyzes, and visualizes complex networks and graph data structures using the Python NetworkX library.

x402 BSV Micropayments

Integrates Bitcoin SV micropayments and BRC-31 authentication into Claude Code for seamless paid API interactions.

Systematic Debugging Pro

Implements a scientific, hypothesis-driven approach to identify root causes and resolve complex software failures.

Requirements Elicitation & Analysis

Facilitates professional requirements gathering through stakeholder interviews, prioritization frameworks, and structured acceptance criteria.

Test Design Patterns

Implements industry-standard testing strategies and patterns to improve code quality and test suite reliability.

TDD Red-Green-Refactor Workflow

Guides the implementation of Test-Driven Development using the Red-Green-Refactor cycle and industry-standard testing patterns.

Secure Coding Practices

Implements robust security patterns including input validation, secrets management, and secure authentication to protect applications from common vulnerabilities.

STRING Protein Interaction Analysis

Accesses and analyzes protein-protein interaction networks and functional enrichment data using the STRING database API.

OWASP Top 10 Security Audit

Audits source code for the most critical web application security risks with actionable remediation patterns and checklists.