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tscircuit Documentation

Provides comprehensive documentation and code references for designing professional PCBs using TypeScript and React.

DNAnexus Genomics Integration

Streamlines genomic data management and bioinformatics app development on the DNAnexus cloud platform using the dxpy Python SDK.

COBRApy Metabolic Modeling

Performs constraint-based reconstruction and analysis of metabolic models for systems biology and metabolic engineering.

Datamol Cheminformatics

Simplifies molecular cheminformatics workflows with a Pythonic wrapper for RDKit, featuring structure standardization, descriptor calculation, and 3D conformer generation.

Outlook Contacts Manager

Manages Microsoft Outlook contacts through PowerShell COM objects for seamless contact creation, searching, and organization.

SimPy Simulation Framework

Builds process-based discrete-event simulations in Python to model complex systems like manufacturing, logistics, and network traffic.

Aeon Time Series ML

Implements advanced time series machine learning tasks including forecasting, classification, and anomaly detection using a scikit-learn compatible framework.

Scholar Evaluation Framework

Evaluates scholarly research and academic papers using the structured ScholarEval methodology for rigor and quality.

AI Provider Settings Panel

Implements a secure, multi-provider AI management interface for Next.js applications to enable user-managed API keys.

ClinVar Genomic Analysis

Queries the NCBI ClinVar database to retrieve, interpret, and process human genetic variant classifications and clinical significance.

Ensembl Genome Database Integration

Queries the Ensembl REST API for genomic data, sequence retrieval, variant analysis, and comparative genomics across 250+ species.

TEG Mobile Architecture Standards

Enforces Transport Exchange Group (TEG) architectural standards for mobile applications to ensure clean, maintainable, and scalable code.

Traceable Spec Generator

Generates PRD and architecture documents with mandatory decision-ledger citations to ensure 100% requirements traceability.

ClinPGx Pharmacogenomics Database

Accesses comprehensive clinical pharmacogenomics data to guide precision medicine and genotype-based dosing decisions.

FlowIO Flow Cytometry Handler

Parses, processes, and generates Flow Cytometry Standard (FCS) files for biological data analysis and bioinformatics pipelines.

Vertex AI Gemini Batch Helper

Streamlines the creation and management of large-scale Gemini batch prediction jobs on Google Cloud Vertex AI.

Angular Testing Patterns

Implements modern Angular 21+ testing strategies using Vitest, Signal testing APIs, and Playwright E2E automation.

Python Best Practices & Patterns

Implements idiomatic Python 3.10+ patterns for modern, type-safe, and highly maintainable application development.

Web Interface Guidelines Reviewer

Audits web UI code for compliance with professional design standards, accessibility requirements, and UX best practices.

Genomic Interval Machine Learning (Geniml)

Builds and deploys machine learning models for genomic interval data and single-cell chromatin accessibility analysis.

Stable Baselines3 Reinforcement Learning

Implements and optimizes reinforcement learning workflows using the Stable Baselines3 PyTorch library.

MVP & Roadmap Architecture

Defines Minimum Viable Products and builds phased implementation roadmaps using MoSCoW prioritization and dependency mapping.

Bash Command Patterns

Optimizes shell command construction with concise bash patterns and best practices for interactive CLI usage.

DrugBank Database Integration

Accesses and analyzes comprehensive pharmaceutical data from DrugBank for drug discovery, pharmacology, and interaction research.

Trekker Task Planning

Organizes and tracks complex multi-step development tasks using Trekker to ensure context persistence and clear execution paths.

FDA Regulatory Data Access

Queries the openFDA API to retrieve comprehensive data on drugs, medical devices, food safety, and regulatory submissions.

Next.js 16 Expert

Architects and implements high-performance web applications using Next.js 16 features like Turbopack, Cache Components, and React 19.2.

Commerce Engine Router

Routes AI agents to specialized tasks for building, managing, and scaling e-commerce storefronts using Commerce Engine.

Google Search Research

Enables real-time web research and fact-checking using Google Search grounding within the Claude Code environment.

Pillar Evidence Synthesis

Transforms raw evidence collections into structured analytical insights and synthesis documents with automated pattern detection.