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Chromatin State Inference

Analyzes histone modification ChIP-seq data to segment the genome into discrete chromatin states using ChromHMM workflows.

Methylation & Chromatin Feature Correlation

Integrates DNA methylation data with chromatin features like ATAC-seq and histone marks to analyze epigenomic relationships and regulatory patterns.

Nested TAD Detection

Identifies hierarchical Topologically Associating Domain (TAD) structures from Hi-C contact maps using the OnTAD algorithm.

Hi-C A/B Compartment Analysis

Performs PCA-based A/B compartment calling and interaction analysis on Hi-C genomic datasets.

Bibliography Creator

Generates and manages structured bibliography entries for academic papers, technical documentation, and research projects.

Bibliography Merger

Merges and deduplicates multiple bibliography files while maintaining consistent citation formats and metadata.

Skill Template

Provides a standardized framework and boilerplate for creating domain-specific Claude Code skills within the Treasure Data ecosystem.

BibTeX Entry Updater

Modifies and updates existing bibliography entries by ID to maintain accurate citation and reference data.

LaTeX to Markdown Converter

Converts LaTeX documents into clean, readable Markdown format while preserving math notation and structural formatting.

LaTeX Text Extractor

Extracts clean, plain text from LaTeX documents by stripping formatting commands and decoding special characters into Unicode.

Bibliography Entry Deleter

Removes specific entries from bibliography files by ID while maintaining file formatting and structure.

BibFilter

Filters and organizes bibliography entries by author, year, keyword, and entry type to streamline research workflows.

Bibliography Validator

Validates bibliography files for syntax errors, format compliance, and missing metadata across multiple academic standards.

Wayback Machine Explorer

Lists and manages archived snapshots from the Wayback Machine to track website history and recover lost content.

Web Page Citation & Archival

Generates professional bibliography citations from web URLs with automatic metadata extraction and Internet Archive snapshots.

NPMS Package Quality Analysis

Analyzes npm packages using NPMS.io metrics to evaluate code quality, popularity, and maintenance health.

Wayback Cache Management

Manages local API response caching for Wayback Machine operations to optimize performance and ensure data freshness.

CVE Vulnerability Lookup

Retrieves detailed information about Common Vulnerabilities and Exposures (CVEs) and affected software versions directly within your development environment.

NPM Package Info

Retrieves comprehensive metadata, version history, and dependency information for any npm package directly within the Claude Code environment.

PyPI Package Info

Retrieves comprehensive metadata for Python packages from the Python Package Index including versions, dependencies, and project links.

Treasure Data Python SDK

Streamlines data querying and ingestion between Python analytical workflows and Treasure Data using the official pytd SDK.

CVE Dependency Audit

Scans project dependencies across multiple programming languages to identify and report known security vulnerabilities and CVEs.

Wayback Machine Newest Capture

Locates and retrieves the most recent archived version of any URL from the Internet Archive's Wayback Machine.

NPMS Package Comparison

Compares multiple npm packages side-by-side using NPMS.io quality metrics to help developers select the best dependencies.

GitHub Repository Insights

Retrieves comprehensive GitHub repository metadata including star counts, fork statistics, and language distributions.

Skill Creator

Provides specialized guidance and best practices for developing modular, context-efficient Claude Code skills.

Treasure Workflow (Digdag)

Designs, implements, and debugs Treasure Workflow (digdag) configurations for automated data orchestration in Treasure Data environments.

Workflow Management

Manages, debugs, and optimizes Treasure Data workflow orchestration through monitoring, performance tuning, and error handling assistance.

Markdown to LaTeX Converter

Converts Markdown documents and snippets into professionally formatted LaTeX code for high-quality typesetting.

Wayback Machine Archive Range

Retrieves and calculates the full historical archive span for any URL using the Wayback Machine.