Data Science & ML Claudeスキル

Paper2All Academic Transformer

Transforms academic papers into interactive websites, professional presentation videos, and print-ready conference posters.

ETE Toolkit for Phylogenetics

Manipulates, analyzes, and visualizes phylogenetic trees with support for evolutionary event detection and NCBI taxonomy integration.

deepTools NGS Analysis

Processes and visualizes high-throughput sequencing data (NGS) including ChIP-seq, RNA-seq, and ATAC-seq workflows.

Scientific Peer Review & Evaluation

Evaluates scientific manuscripts and grant proposals using systematic methodology, statistical rigor, and ethical standards.

ToolUniverse Scientific Research Skill

Accesses over 600 scientific tools and datasets to automate research workflows across bioinformatics, genomics, and drug discovery.

NeuroKit2 Biosignal Analysis

Processes and analyzes physiological signals including ECG, EEG, and EDA for psychophysiology research and clinical applications.

COSMIC Cancer Database Access

Accesses and queries the Catalogue of Somatic Mutations in Cancer (COSMIC) to retrieve genomic data, mutational signatures, and cancer gene census information.

UniProt Database Integration

Enables seamless programmatic access to UniProt for protein sequence retrieval, functional annotation, and biological database ID mapping.

Matplotlib Data Visualization

Generates publication-quality static, animated, and interactive visualizations using Python's foundational plotting library.

Scikit-learn Machine Learning

Streamlines the implementation, evaluation, and deployment of classical machine learning models using the scikit-learn library.

NCBI GEO Database Integration

Accesses and processes NCBI Gene Expression Omnibus (GEO) datasets for transcriptomics and functional genomics analysis.

KEGG Bioinformatics Database

Accesses the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API for biological pathway analysis and molecular interaction mapping.

FDA Regulatory Data Access

Queries the openFDA API to retrieve comprehensive data on drugs, medical devices, foods, and regulatory actions for safety research and analysis.

GWAS Catalog Database

Queries the NHGRI-EBI GWAS Catalog to retrieve genetic variants, SNP-trait associations, and comprehensive genomic summary statistics.

Scikit-Survival for Python

Implements advanced survival analysis and time-to-event modeling using the scikit-survival library in Python.

ClinVar Genomic Database

Queries and interprets NCBI ClinVar genetic variant data to provide clinical significance classifications and genomic annotations.

Dask Parallel Computing

Scales Python data workflows across multiple cores and machines for larger-than-RAM datasets using parallel and distributed computing.

Vaex Big Data Processing

Enables high-performance analysis and visualization of tabular datasets with billions of rows using lazy, out-of-core DataFrames.

PyTDC (Therapeutics Data Commons)

Provides AI-ready datasets, benchmarks, and molecular oracles for drug discovery and therapeutic machine learning.

Pymoo Optimization

Solves complex single and multi-objective optimization problems using evolutionary algorithms and Pareto front analysis.

Pysam Genomics Toolkit

Processes genomic datasets including sequence alignments, variants, and reference sequences using a Pythonic interface to htslib.

Adaptyv Protein Design

Automates protein sequence optimization and experimental validation through a cloud-based wet-lab platform.

Medicinal Chemistry Toolkit

Applies medicinal chemistry filters, drug-likeness rules, and structural alerts for molecular prioritization in drug discovery.

Molfeat Molecular Featurization

Simplifies molecular featurization by providing access to over 100 pre-trained embeddings and hand-crafted featurizers for machine learning.

AnnData for Single-Cell Genomics

Manages annotated data matrices and metadata for single-cell genomics and large-scale biological datasets using the AnnData framework.

LatchBio Integration

Builds and deploys serverless bioinformatics pipelines using the Latch SDK with specialized decorators and cloud data management.

Denario: Scientific Research Automator

Automates end-to-end scientific research workflows from data-driven hypothesis generation to publication-ready LaTeX manuscripts.

NetworkX Graph Analysis

Provides a comprehensive toolkit for creating, manipulating, and analyzing complex network structures and graph algorithms in Python.

Stable Baselines3 RL Integration

Implements reinforcement learning workflows including agent training, custom environment design, and model evaluation using Stable Baselines3.

DeepChem Molecular ML

Simplifies molecular machine learning and drug discovery tasks using the DeepChem toolkit for property prediction and GNNs.