Data Science & ML Agent Skills

ReasoningBank Agent Learning

Implements adaptive learning and high-performance trajectory tracking for autonomous agents using the AgentDB vector backend.

GEO Database Access & Analysis

Accesses and analyzes NCBI Gene Expression Omnibus (GEO) data for transcriptomics and functional genomics research.

Color Envelope Preserving

Ensures deterministic data traversal and logical consistency by enforcing GF(3) color conservation across navigator compositions.

DCC346 Topological Diffusion

Facilitates topological diffusion and autopoietic learning patterns within the Model Context Protocol framework.

Color Envelope Preserving Navigator

Enforces GF(3) color conservation and deterministic traversal across complex data navigator compositions.

Phase Space Transformation

Analyzes and transforms coordinate systems within dynamical systems to preserve underlying physical and mathematical dynamics.

Agent-o-rama

Extracts behavioral patterns and cognitive models from interaction sequences to automate learning for surrogate systems.

OlmoEarth MLX Spatio-Temporal Intelligence

Analyzes planetary intelligence and crypto-geographic data using AI2 OlmoEarth foundation models optimized for Apple Silicon.

Mass Spectrometry Analysis (Matchms)

Processes mass spectrometry data, standardizes metadata, and calculates spectral similarities for metabolomics workflows.

Curiosity-Driven Learning

Implements intrinsic motivation for AI agents by rewarding compression progress and world-model improvement.

Advanced Excel & Spreadsheet Toolkit

Automates professional spreadsheet creation, complex financial modeling, and data analysis with formula-driven accuracy.

Denario Autonomous Research

Automates the end-to-end scientific research pipeline from initial hypothesis generation to publication-ready LaTeX manuscripts.

Scientific Visualization & Plotting

Creates journal-ready, publication-quality scientific figures with standardized styling, multi-panel layouts, and colorblind-safe palettes.

Reactome Pathway Analysis

Integrates the Reactome pathway database to perform biological enrichment analysis, gene mapping, and molecular interaction queries for systems biology research.

Topological Aggregation 98e0c4

Facilitates self-evolving topological aggregations and pattern recognition within the Gay MCP framework.

Stable Baselines3 RL Framework

Implements and optimizes reinforcement learning agents using the Stable Baselines3 library for PyTorch.

ZX-Calculus Quantum Reasoning

Enables diagrammatic reasoning and optimization for quantum circuits using Z-spiders, X-spiders, and rewrite rules.

COSMIC Cancer Genomics

Integrates the COSMIC cancer mutation database into bioinformatics workflows for somatic mutation analysis and precision oncology research.

Scientific Brainstorming Partner

Facilitates creative scientific ideation by generating hypotheses, exploring interdisciplinary connections, and challenging research assumptions.

Topos Polynomial Functors

Models complex interactions and compositional systems using the categorical framework of polynomial functors and dialectica categories.

ClinicalTrials.gov Search & Analysis

Accesses the ClinicalTrials.gov API v2 to search, filter, and export global clinical study data for medical research and patient matching.

Ordered Locale Fanout

Orchestrates triadic parallel agent dispatch with deterministic seeding and voice-specific locales for high-performance Apple Silicon workflows.

Supersparsity Unison

Bridges neural network sparsity research with Unison’s content-addressed ability system to optimize sparse computation and scaling.

Latent-Latency Spectral Bridge

Optimizes the tradeoff between representation compression and computational response time using spectral graph theory and convergence analysis.

K-Scale Ksim Robotics RL

Trains humanoid robot locomotion and manipulation policies using a JAX-native Reinforcement Learning framework built on MuJoCo.

K-Scale Kinfer Inference

Deploys high-performance reinforcement learning policies to real-world robots using a specialized Rust-based ONNX inference engine.

Chemical Abstract Machine (CHAM)

Models computation as non-deterministic chemical reactions within multisets of molecules for parallel systems simulation.

OpenRouter AI Integration

Provides unified access to over 400 AI models through a single, standardized API with intelligent routing and automatic fallbacks.

Geodesic Manifold

Computes shortest paths on spherical surfaces and Riemannian manifolds for navigation, aviation routing, and spatial analysis.

Monoidal Category Theory Logic

Implements and applies the formal axioms of monoidal categories to define structural relationships and coherent transformations in complex systems.