Data Science & ML Agent Skills

DeepChem Molecular Machine Learning

Streamlines molecular machine learning workflows for drug discovery, property prediction, and materials science using graph neural networks.

Adaptyv Protein Engineering

Facilitates automated protein testing and validation through cloud-based laboratory services and sequence optimization tools.

DiffDock Molecular Docking

Predicts 3D binding poses for protein-ligand complexes using state-of-the-art diffusion-based deep learning.

Astropy Astronomy Toolkit

Processes and analyzes astronomical data using the Astropy library for coordinate transformations, cosmology, and FITS file management.

Pinecone Vector Database Integration

Integrates Pinecone's managed vector database into your AI workflows to enable high-performance RAG, semantic search, and recommendation systems.

Astropy Mastery

Facilitates professional-grade astronomical data analysis and astrophysical calculations using the core Astropy Python library.

Histolab Digital Pathology

Processes digital pathology whole slide images (WSI) for tissue detection, tile extraction, and deep learning dataset preparation.

RDKit Cheminformatics Toolkit

Performs advanced molecular manipulation, chemical property calculation, and 3D coordinate generation for cheminformatics workflows.

Context Engineering Fundamentals

Master the core principles and mechanics of context management to build more efficient and accurate AI agent architectures.

Yanex Experiment Tracking

Streamlines the execution, management, and analysis of machine learning experiments using a lightweight, Git-aware Python framework.

PyHealth: Healthcare AI Toolkit

Simplifies the development and deployment of machine learning models for clinical data and healthcare applications.

Context Degradation & Engineering

Diagnose and mitigate performance loss in agentic systems caused by large, conflicting, or poisoned context windows.

DiffDock Molecular Docking

Predicts 3D protein-ligand binding poses using state-of-the-art diffusion-based deep learning models for structure-based drug design.

PyHealth Healthcare AI

Builds and deploys healthcare machine learning models using specialized tools for EHR data, clinical tasks, and medical coding systems.

Arboreto Gene Regulatory Network Inference

Infers gene regulatory networks (GRNs) from transcriptomics data using scalable machine learning algorithms like GRNBoost2 and GENIE3.

NeuroKit2 Biosignal Processing

Processes and analyzes diverse physiological signals including heart rate, brain activity, and respiratory patterns for research and clinical applications.

NeuroKit2 Biosignal Analysis

Analyzes and processes complex physiological signals like ECG, EEG, and EDA using the comprehensive NeuroKit2 Python library.

NeuroKit2 Biosignal Processing

Processes and analyzes physiological biosignals including ECG, EEG, EDA, and respiratory patterns for psychophysiology and clinical research.

scvi-tools Single-Cell Omics

Performs advanced single-cell omics data analysis using probabilistic models for RNA-seq, ATAC-seq, and spatial transcriptomics.

RDKit Cheminformatics

Performs advanced molecular analysis, property calculation, and structural manipulation for cheminformatics workflows.

PyLabRobot Lab Automation

Automates laboratory workflows and controls hardware like liquid handlers, plate readers, and incubators using a unified Python interface.

BioServices Bioinformatics Toolkit

Provides programmatic access to over 40 bioinformatics web services and databases for integrated biological data analysis and workflow automation.

Bioinformatics Services (BioServices)

Provides programmatic access to over 40 bioinformatics web services and databases for integrated biological data analysis.

European Nucleotide Archive (ENA) Access

Connects Claude to the European Nucleotide Archive (ENA) for retrieving genomic sequences, raw reads, and metadata.

ENA Bioinformatics Integration

Accesses and retrieves genomic data from the European Nucleotide Archive for bioinformatics research and pipelines.

HMDB Database Integration

Accesses and queries the Human Metabolome Database to retrieve detailed information on over 220,000 metabolites for research and analysis.

ENA Database Access

Simplifies retrieval of nucleotide sequences, raw reads, and genome assemblies from the European Nucleotide Archive for bioinformatics pipelines.

GEO Database

Accesses and analyzes NCBI Gene Expression Omnibus (GEO) datasets for transcriptomics and functional genomics research.

Universal Data Transformation

Transforms, cleans, and reshapes complex datasets using standard Python libraries like pandas and numpy for seamless data preprocessing.

Gene Database Integration

Queries the NCBI Gene database to retrieve comprehensive genetic information, sequences, and functional annotations for biological research.