Data Science & ML Agent Skills

Gay MCP Topological Genesis

Generates and evolves topological code patterns through autopoietic interaction and color-based seeds.

LatchBio Integration

Builds and deploys serverless bioinformatics pipelines using the Latch SDK with specialized decorators and cloud data management.

Denario: Scientific Research Automator

Automates end-to-end scientific research workflows from data-driven hypothesis generation to publication-ready LaTeX manuscripts.

NetworkX Graph Analysis

Provides a comprehensive toolkit for creating, manipulating, and analyzing complex network structures and graph algorithms in Python.

Geodesic Manifold

Computes shortest paths on spherical surfaces and Riemannian manifolds for navigation, aviation routing, and spatial analysis.

DeepChem Molecular ML

Simplifies molecular machine learning and drug discovery tasks using the DeepChem toolkit for property prediction and GNNs.

DiffDock Molecular Docking

Predicts accurate protein-ligand binding poses and 3D structures using state-of-the-art diffusion-based deep learning models.

Scientific Compute Resource Detector

Analyzes system hardware to generate optimized strategic recommendations for computationally intensive scientific and machine learning tasks.

Plurigrid ASI Orchestrator

Orchestrates complex AI skill ecosystems using category theory, topological synthesis, and deterministic GF(3) conservation.

OpenRouter AI Integration

Provides unified access to over 400 AI models through a single, standardized API with intelligent routing and automatic fallbacks.

Topological Logic & GF(3) Verification

Verifies mathematical conservation laws and manages autopoietic logic within topological computational frameworks.

ReasoningBank Agent Learning

Implements adaptive learning and high-performance trajectory tracking for autonomous agents using the AgentDB vector backend.

GEO Database Access & Analysis

Accesses and analyzes NCBI Gene Expression Omnibus (GEO) data for transcriptomics and functional genomics research.

Stable Baselines3 RL Framework

Implements and optimizes reinforcement learning agents using the Stable Baselines3 library for PyTorch.

DCC346 Topological Diffusion

Facilitates topological diffusion and autopoietic learning patterns within the Model Context Protocol framework.

Scientific Visualization

Generates publication-ready scientific figures with journal-specific styling, colorblind-safe palettes, and high-resolution export formats.

Supersparsity Unison

Bridges neural network sparsity research with Unison’s content-addressed ability system to optimize sparse computation and scaling.

GNU Radio SDR & Signal Processing

Builds and manages complex signal processing flowgraphs and custom Python blocks for Software Defined Radio (SDR) applications.

Scikit-Survival Analysis

Performs advanced survival analysis and time-to-event modeling using the scikit-survival Python library.

Triadic Video Analysis & GF(3) Management

Analyzes and categorizes video content using a GF(3) triadic framework to ensure deterministic processing and system-wide data conservation.

Topological Aggregation 98e0c4

Facilitates self-evolving topological aggregations and pattern recognition within the Gay MCP framework.

993bdc TiDAR Integrator

Facilitates topological data integration and autopoietic skill evolution within the worldmat framework.

Scientific Visualization & Plotting

Creates journal-ready, publication-quality scientific figures with standardized styling, multi-panel layouts, and colorblind-safe palettes.

Denario Autonomous Research

Automates the end-to-end scientific research pipeline from initial hypothesis generation to publication-ready LaTeX manuscripts.

Scientific Brainstorming Partner

Facilitates creative scientific ideation by generating hypotheses, exploring interdisciplinary connections, and challenging research assumptions.

MLOps Engineering

Implements end-to-end machine learning lifecycles including model versioning, automated training pipelines, and production monitoring for scalable AI systems.

Reactome Pathway Analysis

Integrates the Reactome pathway database to perform biological enrichment analysis, gene mapping, and molecular interaction queries for systems biology research.

DuckDB Spatial Analysis

Performs high-performance geographic data analysis and H3 hexagonal indexing using DuckDB's spatial extensions.

COSMIC Cancer Genomics

Integrates the COSMIC cancer mutation database into bioinformatics workflows for somatic mutation analysis and precision oncology research.

Evidence Evaluator

Evaluates the credibility and quality of information sources using standardized scientific frameworks and the CRAAP test.