Data Science & ML Agent Skills

Excel to Markdown Reader

Converts Excel (.xlsx) spreadsheets into clean Markdown tables for seamless data analysis and documentation.

Domain Advisor

Plans data science and hardware optimization experiments by analyzing historical project logs and domain-specific configurations.

Renku AI Video Generator

Generates complex AI-driven video compositions and media pipelines using the Renku CLI.

Modern R Development

Implements professional R programming patterns using the modern tidyverse ecosystem, rlang metaprogramming, and performance optimization techniques.

Modern R Development

Implements modern R programming practices, tidyverse patterns, and performance optimizations for data science workflows.

Whisper Transcription

Transcribes audio files into text using a local whisper.cpp server with GPU acceleration.

Benchling R&D Integration

Automates Benchling life sciences workflows and manages biological data via the Python SDK and REST API.

Document Citations & RAG

Implements robust document attribution and Retrieval-Augmented Generation (RAG) patterns for verifiable AI responses.

FlowIO (Flow Cytometry Data Handler)

Parses and generates Flow Cytometry Standard (FCS) files to facilitate cytometry data preprocessing and scientific analysis.

RAG Engineer

Architects and optimizes high-performance Retrieval-Augmented Generation systems using advanced embedding, chunking, and search strategies.

Sanctuary DNA Agent DSL

Constructs sophisticated Gnostic agent workflows using a structured DSL built on LangGraph's execution substrate.

Histolab WSI Processing

Automates tissue detection and tile extraction from whole slide images for digital pathology and machine learning workflows.

Datamol Cheminformatics

Simplifies molecular cheminformatics and drug discovery workflows with a Pythonic abstraction layer over RDKit.

ClinVar Database

Queries and interprets genetic variant clinical significance data from the NCBI ClinVar database.

Biopython Molecular Biology Toolkit

Streamlines computational molecular biology tasks including sequence analysis, biological file parsing, and programmatic NCBI database access.

Neuropixels Data Analysis

Streamlines the analysis of high-density neural recordings from Neuropixels probes through automated preprocessing, spike sorting, and quality curation.

D3.js Visualisation

Builds sophisticated, interactive data visualizations and custom SVG-based charts using the D3.js library.

PathML Computational Pathology

Processes and analyzes whole-slide pathology images using advanced machine learning, spatial graph construction, and multiparametric imaging workflows.

Modal Cloud Compute

Deploys and runs Python applications on serverless cloud infrastructure with automatic scaling and GPU acceleration.

ENA Database Access

Retrieves nucleotide sequences, raw sequencing reads, and metadata from the European Nucleotide Archive for genomics research.

PyTDC (Therapeutics Data Commons)

Accesses AI-ready drug discovery datasets and benchmarks for therapeutic machine learning and pharmacological prediction.

Adaptyv Protein Design & Validation

Automates protein testing and validation through a cloud-based laboratory platform for accelerated biotechnological research and sequence optimization.

Denario Scientific Research Assistant

Automates the end-to-end scientific research pipeline from hypothesis generation and data analysis to publication-ready LaTeX manuscripts.

AI Engineering & MLOps Guide

Provides comprehensive guidance and best practices for designing, building, and scaling production-grade AI systems and machine learning pipelines.

Data Commons Client

Provides programmatic access to global statistical data for demographic, economic, and environmental research.

Cirq Quantum Computing

Designs, simulates, and executes quantum circuits using Google's Cirq framework for NISQ-era hardware and noise-aware algorithms.

PyMC Bayesian Modeling

Streamlines the creation, fitting, and validation of Bayesian models using PyMC's modern probabilistic programming interface.

FRED Economic Data

Queries the Federal Reserve Economic Data (FRED) API to retrieve over 800,000 economic time series for financial research and macroeconomic analysis.

ReasoningBank AgentDB Adaptive Learning

Implements high-performance adaptive learning and memory distillation for self-improving AI agents using AgentDB.

RAG Implementation & Optimization

Builds and optimizes Retrieval-Augmented Generation (RAG) systems using advanced vector search, semantic chunking, and retrieval patterns.