Data Science & ML Agent Skills

Metabolomics Workbench Explorer

Accesses the NIH Metabolomics Workbench API to retrieve experimental study data, metabolite structures, and standardized biochemical nomenclature.

Data Preprocessing Pipeline

Automates the cleaning, transformation, and validation of raw data into production-ready datasets for machine learning models.

Metabolomics Workbench Database

Accesses the NIH Metabolomics Workbench to query metabolite structures, experimental studies, and mass spectrometry data.

Pymoo Optimization

Solves complex single and multi-objective optimization problems using state-of-the-art evolutionary algorithms and decision-making tools.

AgentDB Memory Patterns

Implements high-performance persistent memory and learning patterns for stateful AI agents using AgentDB.

Dataset Splitter

Automates the partitioning of data into training, validation, and testing sets for machine learning workflows.

Medchem Molecular Filtering

Applies medicinal chemistry rules, structural alerts, and drug-likeness filters to prioritize compound libraries for drug discovery.

SymPy Symbolic Mathematics

Performs exact symbolic mathematical computations including algebra, calculus, and physics modeling directly in Python.

ETE Phylogenetic Toolkit

Manipulates, analyzes, and visualizes phylogenetic and hierarchical trees with seamless NCBI taxonomy integration.

GWAS Database Integration

Queries the NHGRI-EBI GWAS Catalog to retrieve genetic variant associations, trait data, and genomic summary statistics.

Scientific Literature Reviewer

Conducts systematic, comprehensive literature reviews across multiple scientific databases with verified citations and professional formatting.

ZINC Database Access

Connects Claude to the ZINC22 database to perform chemical compound searches, virtual screening, and drug discovery workflows.

LlamaFarm Service Control: Stop

Manages the graceful termination of LlamaFarm backend services and background RAG workers.

ML Hyperparameter Tuner

Optimizes machine learning model performance through automated grid search, random search, and Bayesian optimization.

Vaex Big Data Processing

Processes and visualizes massive tabular datasets exceeding RAM limits using lazy, out-of-core DataFrames.

Claude Opus 4.5 Migration Guide

Migrates codebases and prompts from Claude Sonnet 4.0, 4.5, or Opus 4.1 to the Opus 4.5 model across multiple platforms.

Excel & Spreadsheet Automation

Generates, edits, and analyzes complex Excel workbooks using dynamic formulas, professional financial formatting, and automated data validation.

Denario Scientific Research Automation

Automates end-to-end scientific research workflows from data analysis and hypothesis generation to publication-ready LaTeX manuscripts.

Benchling Integration

Integrates Claude with the Benchling R&D platform to automate life sciences data management, laboratory inventory, and electronic notebook entries.

Aeon Time Series ML

Provides a comprehensive suite of specialized algorithms for time series machine learning including classification, forecasting, and anomaly detection.

Dataset Splitter

Automates the partitioning of datasets into training, validation, and testing sets for machine learning workflows.

Nixtla Usage Optimizer

Audits Nixtla library implementation to suggest cost-effective model routing and forecasting performance optimizations.

NetworkX Graph Analysis

Creates, analyzes, and visualizes complex network structures and graph algorithms using the NetworkX library in Python.

ClinicalTrials.gov Explorer

Accesses and queries the ClinicalTrials.gov API v2 to retrieve comprehensive data on global clinical studies.

Benchling R&D Integration

Connects Claude to the Benchling life sciences platform to automate R&D data management, registry updates, and laboratory workflows.

LatchBio Integration

Builds, deploys, and manages serverless bioinformatics workflows using the Latch SDK and cloud infrastructure.

deepTools Bioinformatics Suite

Processes and visualizes high-throughput sequencing data for genomics research and quality control.

COSMIC Cancer Database Access

Accesses and manages the COSMIC somatic mutation database for cancer research and precision oncology workflows.

AgentDB Vector Search

Implements high-performance semantic vector search and document retrieval using AgentDB's ultra-fast HNSW indexing and quantization.

ClinVar Database Assistant

Queries NCBI ClinVar to retrieve genetic variant clinical significance, interpret pathogenicity, and annotate VCF files for genomic medicine.