Data Science & ML Agent Skills

Scientific Brainstorming Partner

Facilitates collaborative research ideation to generate novel hypotheses, identify research gaps, and develop innovative scientific methodologies.

DiffDock Molecular Docking

Predicts high-accuracy 3D protein-ligand binding poses using state-of-the-art diffusion-based deep learning models.

ADK Agent Builder

Architects production-ready autonomous AI agents and multi-agent systems using Google's Agent Development Kit and Claude.

ADK Agent Engineer

Engineers production-ready Agent Development Kit (ADK) applications with automated testing, multi-agent orchestration, and GCP deployment.

Scholar Evaluation

Systematically evaluates research papers and scholarly work using the ScholarEval framework for rigorous academic assessment.

GEO Database Access

Accesses and analyzes NCBI Gene Expression Omnibus (GEO) data for transcriptomics and genomics research.

Astropy for Claude

Simplifies astronomical data analysis and astrophysical calculations using the comprehensive Astropy Python library.

COBRApy Metabolic Modeling

Performs constraint-based metabolic modeling and systems biology simulations using the COBRApy framework.

Dask Parallel Computing

Scales Python data processing and scientific computing across multiple cores or clusters for datasets that exceed available memory.

NeuroKit2 Biosignal Analysis

Processes and analyzes complex physiological signals including ECG, EEG, EDA, and more using the NeuroKit2 Python library.

Medical Literature Review Assistant

Streamlines systematic literature searches and reference management using PubMed, PICO analysis, and citation metrics.

Excel DCF Valuation Modeler

Builds professional investment banking-standard discounted cash flow (DCF) models in Excel with automated financial projections and sensitivity analysis.

Ensembl Genome Database

Queries the Ensembl REST API to retrieve gene data, sequences, and variant analysis for over 250 species.

Data Commons Client

Provides programmatic access to global statistical datasets including demographic, economic, and environmental indicators via the Data Commons API.

NLP Text Analyzer

Analyzes textual data using natural language processing to extract sentiment, keywords, and core topics.

Denario Scientific Research Assistant

Automates the complete scientific research lifecycle from initial data analysis to publication-ready LaTeX manuscripts.

Scientific Schematics

Generates publication-quality scientific diagrams and neural network architectures using AI-driven iterative refinement.

Matplotlib Scientific Visualization

Generates professional, publication-quality plots and charts using Python's foundational visualization library.

scvi-tools for Single-Cell Analysis

Implements probabilistic deep learning models for comprehensive single-cell omics data analysis and multimodal integration.

COBRApy Metabolic Modeling

Performs constraint-based metabolic modeling, flux balance analysis, and gene knockout simulations for systems biology and metabolic engineering.

BioServices Bioinformatics Toolbox

Provides programmatic access to over 40 bioinformatics web services and databases for integrated biological data analysis and workflow automation.

NCBI GEO Data Integration

Accesses and processes gene expression and functional genomics data from the NCBI Gene Expression Omnibus repository.

Llamafile Local LLM Manager

Configures and manages Mozilla Llamafile to run high-performance GGUF models locally with an OpenAI-compatible API.

LiteLLM Integration

Simplifies Python-based LLM interactions by providing a unified interface for over 100 cloud and local providers using the OpenAI format.

Gemini Embeddings Integration

Generates high-performance text embeddings via the Google Gemini API for semantic search, RAG, and data classification tasks.

PubChem Database Integration

Accesses and queries the PubChem database via PUG-REST API and PubChemPy for comprehensive chemical informatics and compound analysis.

Gemini API Integration

Integrates Google's Gemini API suite into Claude Code for multimodal analysis, image generation, and real-time search grounding.

Matplotlib Visualization

Generates publication-quality scientific visualizations and complex multi-panel plots using Python's foundational Matplotlib library.

Denario Research Assistant

Automates end-to-end scientific research workflows from data analysis and hypothesis generation to producing publication-ready LaTeX papers.

Local Text-to-Speech

Generates high-quality speech audio locally on Apple Silicon using MLX acceleration and the Kokoro model.