Data Science & ML Agent Skills

PathML Computational Pathology

Processes and analyzes whole-slide pathology images using advanced machine learning, spatial graph construction, and multiparametric imaging workflows.

D3.js Visualisation

Builds sophisticated, interactive data visualizations and custom SVG-based charts using the D3.js library.

AI Multimodal Processing

Processes and generates complex multimedia content including audio, images, video, and documents using the Google Gemini API.

Neuropixels Data Analysis

Streamlines the analysis of high-density neural recordings from Neuropixels probes through automated preprocessing, spike sorting, and quality curation.

Biopython Molecular Biology Toolkit

Streamlines computational molecular biology tasks including sequence analysis, biological file parsing, and programmatic NCBI database access.

ClinVar Database

Queries and interprets genetic variant clinical significance data from the NCBI ClinVar database.

Datamol Cheminformatics

Simplifies molecular cheminformatics and drug discovery workflows with a Pythonic abstraction layer over RDKit.

ReasoningBank Intelligence

Implements adaptive learning systems to enable AI agents to recognize patterns, optimize strategies, and continuously improve through experience.

AgentDB Memory Patterns

Implements persistent, high-performance memory and learning patterns for AI agents to maintain context across sessions.

Workers AI

Provides expert guidance on implementing AI models, generating embeddings, and building Retrieval Augmented Generation (RAG) systems using Cloudflare’s serverless AI platform.

Histolab WSI Processing

Automates tissue detection and tile extraction from whole slide images for digital pathology and machine learning workflows.

Loop Vectorizer

Transforms inefficient Python loops into high-performance vectorized PyTorch operations to eliminate computational bottlenecks and optimize GPU utilization.

Physics Validator

Validates optical physics parameters for imaging simulations to ensure physically realistic instrument configurations and diffraction regimes.

FlowIO (Flow Cytometry Data Handler)

Parses and generates Flow Cytometry Standard (FCS) files to facilitate cytometry data preprocessing and scientific analysis.

Benchling R&D Integration

Automates Benchling life sciences workflows and manages biological data via the Python SDK and REST API.

Document Parser

Transforms oversized documents into structured, token-optimized hierarchical sections with extracted metadata to overcome context window limitations.

Whisper Transcription

Transcribes audio files into text using a local whisper.cpp server with GPU acceleration.

Renku AI Video Generator

Generates complex AI-driven video compositions and media pipelines using the Renku CLI.

Domain Advisor

Plans data science and hardware optimization experiments by analyzing historical project logs and domain-specific configurations.

Excel to Markdown Reader

Converts Excel (.xlsx) spreadsheets into clean Markdown tables for seamless data analysis and documentation.

Python Performance Optimization Patterns

Optimizes Python codebases using verified, low-risk patterns for I/O, NumPy operations, and efficient directory scanning.

Vercel AI SDK Integrator

Implements modern AI patterns including streaming responses, tool calling, and structured outputs using the Vercel AI SDK.

Markov Trading Regime Features

Implements and debugs dynamic Hidden Markov Model (HMM) regime detection for Reinforcement Learning trading observations.

BaSiC Caching Evaluation

Guides bioimaging optimization by advising against BaSiC caching and providing high-performance GPU-accelerated alternatives.

KINTSUGI GPU & Quality Priority

Enforces scientific-grade quality standards and mandatory GPU acceleration for KINTSUGI image processing pipelines.

Weaviate RAG Integration

Implements and manages Retrieval-Augmented Generation (RAG) systems using Weaviate vector databases for semantic search and document retrieval.

Scientific Data Science

Provides standardized statistical analysis strategies and data exploration patterns for scientific discovery and research.

Amazon Bedrock Prompt Management

Streamlines the creation, versioning, and lifecycle management of Amazon Bedrock prompt templates with variable substitution and A/B testing.

Gemini 3 Pro API Integration

Integrates Google's Gemini 3 Pro API and SDK into applications for advanced reasoning, streaming chat, and large-context processing.

Amazon Bedrock Agents

Builds and manages autonomous AI agents on Amazon Bedrock using foundation models, action groups, and knowledge bases.