Data Science & ML Agent Skills

scvi-tools Single-Cell Analysis

Analyzes single-cell omics data using deep generative models for batch correction, multi-omic integration, and probabilistic modeling.

Aeon Time Series Analysis

Performs advanced time series machine learning tasks including classification, forecasting, and anomaly detection using scikit-learn compatible APIs.

scikit-bio Bioinformatics & Ecology

Performs comprehensive bioinformatics analysis including sequence manipulation, phylogenetics, and microbial ecology statistics within Python.

Gtars Genomic Analysis

Accelerates genomic interval analysis and machine learning preprocessing using a high-performance Rust toolkit with Python bindings.

Resource Discovery & Strategy

Detects system hardware capabilities and provides optimized computational strategies for scientific and data-intensive tasks.

Excel & Spreadsheet Scientific Toolkit

Empowers Claude to create, analyze, and format professional Excel spreadsheets and financial models with automated formula recalculation.

Scientific Schematics & Diagrams

Generates publication-quality scientific diagrams, neural network architectures, and flowcharts using specialized Python libraries.

Reactome Pathway Database & Analysis

Accesses the Reactome database to perform biological pathway analysis, gene mapping, and enrichment studies for systems biology.

ClinicalTrials.gov Search & Analytics

Facilitates programmatic access to the ClinicalTrials.gov API v2 for advanced trial discovery, patient matching, and medical research data extraction.

LatchBio Bioinformatics Integration

Builds and deploys production-grade bioinformatics pipelines as serverless workflows on the Latch platform.

Scientific Research Brainstorming

Facilitates creative scientific problem-solving by generating hypotheses and exploring interdisciplinary connections as a research ideation partner.

bioRxiv Research Database

Searches and retrieves life sciences preprints from the bioRxiv database by keywords, authors, and categories.

OpenAlex Scholarly Database

Accesses and analyzes over 240 million scholarly works, authors, and institutions via the OpenAlex API for automated scientific discovery.

TorchDrug for Molecular Science

Empowers Claude to perform graph-based drug discovery, molecular property prediction, and protein modeling using the TorchDrug framework.

ENA Genomics Data Access

Access and retrieve comprehensive nucleotide sequence data and metadata from the European Nucleotide Archive (ENA).

Arboreto GRN Inference

Infers gene regulatory networks from transcriptomics data using scalable algorithms like GRNBoost2 and GENIE3.

PubMed Database Access

Enables advanced searching and programmatic retrieval of biomedical literature from the PubMed database using E-utilities and MeSH terms.

Pymatgen Materials Science Toolkit

Provides comprehensive tools for materials analysis, crystal structure manipulation, and Materials Project database integration.

NCBI GEO Scientific Data Access

Accesses, searches, and retrieves gene expression and functional genomics data from the NCBI Gene Expression Omnibus (GEO).

NetworkX Analysis & Visualization

Analyzes and visualizes complex graph data structures using the comprehensive Python NetworkX library.

DrugBank Database Analysis

Integrates comprehensive pharmaceutical data from DrugBank for drug discovery, pharmacology research, and safety analysis.

PyOpenMS Mass Spectrometry Analysis

Processes and analyzes complex mass spectrometry data for proteomics and metabolomics workflows using the PyOpenMS library.

Clinical Decision Support Writer

Generates professional, publication-ready clinical decision support documents and biomarker-stratified cohort analyses in LaTeX format.

AnnData for Claude Code

Manages and analyzes annotated data matrices for single-cell genomics and large-scale biological datasets.

deepTools NGS Analysis

Processes and analyzes high-throughput sequencing data to generate publication-quality genomic visualizations and quality control reports.

Bioinformatics & Genomic Data Toolkit

Retrieves genomic, proteomic, and structural data from over 20 biological databases using a unified interface.

Medchem Scientific Discovery

Applies medicinal chemistry filters and drug-likeness rules to prioritize compound libraries for autonomous discovery.

Polars Data Engineering

Accelerates high-performance data analysis and manipulation using the lightning-fast Polars DataFrame library.

Vaex Big Data Analysis

Processes and analyzes massive tabular datasets exceeding available RAM using lazy, out-of-core DataFrame operations.

SymPy Symbolic Mathematics

Performs exact symbolic mathematics in Python, including algebraic solving, calculus, and matrix manipulations.