Data Science & ML Agent Skills

Scanpy Single-Cell Analysis

Performs comprehensive single-cell RNA-seq analysis workflows including quality control, clustering, and trajectory inference.

Arboreto Gene Regulatory Network Inference

Infers gene regulatory networks from transcriptomics data using scalable algorithms like GRNBoost2 and GENIE3.

Biopython Bioinformatics Toolkit

Automates computational molecular biology tasks including sequence manipulation, NCBI database queries, and structural analysis.

PyMC Bayesian Modeling

Build, fit, and validate complex Bayesian probabilistic models using the PyMC Python library and modern MCMC sampling techniques.

Gemini Document Processing

Integrates Google Gemini's native vision capabilities to analyze, summarize, and extract structured data from complex PDF documents.

Hypogenic Scientific Discovery

Automates the generation and testing of scientific hypotheses by synthesizing empirical data and existing research literature.

Python Experiment Reproducibility

Ensures deterministic results in Python research code by centralizing configurations, controlling randomness, and recording run metadata.

PufferLib RL Performance

Accelerates reinforcement learning workflows with high-performance training, optimized environment vectorization, and seamless multi-agent support.

Training Curve Interpreter

Analyzes machine learning training logs to visualize loss curves, detect training issues, and provide diagnostic insights.

DiffDock Molecular Docking

Predicts 3D protein-ligand binding poses using state-of-the-art diffusion-based deep learning for drug discovery.

ZINC Database Integration

Accesses the ZINC22 database to search, filter, and retrieve over 230 million purchasable chemical compounds for drug discovery.

Astropy Scientific Computing

Performs advanced astronomical data analysis, coordinate transformations, and cosmological calculations using the core Astropy Python library.

FinnHub Financial Data

Integrates real-time financial market data including stock quotes, forex rates, crypto prices, and company fundamentals via the FinnHub API.

AlphaFold Database Access

Retrieve and analyze over 200 million AI-predicted protein structures from the AlphaFold DB for structural biology and drug discovery.

Matchms Mass Spectrometry Analysis

Processes and analyzes mass spectrometry data through spectral similarity, metadata harmonization, and automated workflows.

PyTorch Geometric (PyG) Expert

Builds and trains sophisticated Graph Neural Networks (GNNs) using the PyTorch Geometric library for irregular data structures.

LabArchives ELN Integration

Automates electronic lab notebook workflows including data uploads, notebook backups, and programmatic entry management via the LabArchives REST API.

Cosmic Cancer Database Integration

Accesses and manages somatic mutation data from the COSMIC database for cancer research and precision oncology.

DeepChem Molecular ML

Streamlines molecular machine learning and drug discovery by providing specialized featurizers, graph neural networks, and chemical benchmark datasets.

CZ CELLxGENE Census Explorer

Queries and analyzes large-scale single-cell genomics data from the CZ CELLxGENE Census repository.

scvi-tools: Probabilistic Single-Cell Analysis

Implement deep generative models for single-cell omics analysis, enabling batch correction, multimodal integration, and probabilistic differential expression.

Statistical Trading Symbol Selection

Analyzes market data using Hurst exponent, GARCH models, and Markov regime detection to identify optimal trading symbols for quantitative strategies.

Scanpy Single-Cell Analysis

Performs comprehensive single-cell RNA-seq analysis workflows including quality control, clustering, and visualization.

Seaborn Statistical Visualization

Creates publication-quality statistical graphics and complex multi-panel data visualizations with minimal Python code.

Harmonic Insight AI Assistant

Standardizes the implementation of Claude-powered AI assistants across the Insight Business Suite with built-in persona systems and BYOK management.

NCBI Gene Database Integration

Simplifies gene data retrieval and annotation by querying the NCBI Gene database via E-utilities and Datasets APIs.

PufferLib Reinforcement Learning

Accelerates reinforcement learning workflows with high-performance environment vectorization and optimized PPO training.

Bioinformatics Data & Analysis (gget)

Provides a unified interface for rapid bioinformatics queries, genomic sequence analysis, and protein structure prediction across 20+ scientific databases.

Bedrock AgentCore Memory

Integrates persistent episodic and short-term memory into Amazon Bedrock agents to maintain user context and learn from interactions across sessions.

LLM Chat Integration

Integrates sophisticated large language model chat completions into backend applications using the z-ai-web-dev-sdk.