Data Science & ML Agent Skills

Beacon-Repeater MLX-JAX Orchestrator

Orchestrates bidirectional MLX-JAX workflows using spectral gap analysis and topological life pattern resurrection.

Energy Dynamics ACSet Framework

Manages and optimizes computational skills using physics-motivated information theory and categorical data structures.

Expected Value

Calculates probability-weighted outcomes to facilitate rational decision-making under uncertainty for investments, product development, and strategic initiatives.

Interactome RL Environment

Simulates and models open-source contributor network dynamics using category-theoretic reinforcement learning and ACSet-native MDPs.

Presheaf Topos Modeling

Implements and explores presheaf toposes as contravariant set-valued functors for categorical logic and structural data modeling.

Universal Property Logic

Applies category theory and unique factorization principles to ensure structural integrity in complex systems.

Multiversal Finance

Implements decentralized prediction markets for evaluating the 'interestingness' of deterministic observations using compression progress metrics.

Louisville Quantum Gravity

Analyzes and implements stationary measures for the KPZ equation using Liouville quantum gravity and matrix product ansatz.

BioServices Bioinformatics Toolkit

Provides programmatic access to over 40 bioinformatics web services for biological data retrieval, identifier mapping, and pathway analysis.

Worldmat TiDAR Engine

Implements a 3×3×3 matrix execution framework using the TiDAR pattern with GF(3) conservation invariants.

Quillen Model Category Framework

Implements and manages Quillen model category structures for formal homotopy theory and mathematical modeling.

K-Scale Robotics Ecosystem

Provides a comprehensive open-source framework for building, training, and deploying humanoid robots using reinforcement learning and sim-to-real transfer.

RepEng MLX: LLM Behavior Steering

Steers LLM behavior on Apple Silicon via representation engineering and control vector extraction.

Latent-Latency Spectral Bridge

Optimizes the tradeoff between representation compression and computational response time using spectral graph theory and convergence analysis.

Invariant Measure Analysis

Analyzes dynamical systems to identify measures preserved by flow and evaluate qualitative stability behavior.

COBRApy Metabolic Modeling

Performs constraint-based reconstruction and analysis (COBRA) of metabolic models for systems biology and metabolic engineering.

Matplotlib Data Visualization

Create publication-quality charts, graphs, and complex data visualizations using Python's foundational plotting library.

Modelica Multi-Domain Modeling

Simulates complex physical systems using acausal equation-based modeling and Wolfram Language integration.

Single-Cell Genomics Analysis (scvi-tools)

Analyzes single-cell omics data using probabilistic models for tasks like batch correction, dimensionality reduction, and differential expression.

PyDESeq2 Gene Expression Analysis

Performs comprehensive differential gene expression analysis on bulk RNA-seq data using the PyDESeq2 framework.

Biopython Molecular Biology

Automates biological computation tasks including sequence analysis, structural bioinformatics, and programmatic NCBI database access.

World Extractable Value (WEV)

Quantifies and extracts financial value from system inefficiencies by modeling transitions between selfish equilibria and optimal states.

Chaotic Attractor Dynamics

Analyzes complex dynamical systems and strange attractors with sensitive dependence on initial conditions.

Hypogenic AI Hypothesis Generator

Automates scientific hypothesis generation and empirical testing using large language models and research literature integration.

Natural Transformation

Implements category-theoretic natural transformations to map between computational functors while preserving structural integrity.

Clinical Decision Support

Generates professional, publication-ready clinical decision support documents and biomarker-stratified cohort analyses for pharmaceutical and clinical research.

Dynamical Systems Semi-conjugacy

Analyzes and maps the qualitative transformations between dynamical systems using topological semi-conjugacy methods.

GMRA Multi-Resolution Analysis

Performs high-dimensional geometric multi-resolution analysis with deterministic local reconstructability across MATLAB, Julia, and Python.

Enzyme.jl Automatic Differentiation

Implements high-performance LLVM-level automatic differentiation for Julia code on both CPU and GPU architectures.

Haskell Diagrams DSL

Generates complex declarative vector graphics and scientific visualizations using the Haskell Diagrams embedded domain-specific language.