Data Science & ML Agent Skills

ML Model Trainer

Automates the end-to-end machine learning lifecycle from data analysis and model selection to training and performance evaluation.

LangChain Architecture & LLM Agents

Designs and implements sophisticated LLM applications using LangChain's modular framework for agents, memory, and multi-step workflows.

Phylogenomics Workflow Generator

Automates the generation of scheduler-aware phylogenomic workflows from genome assemblies using single-copy orthologs.

Scientific Data Extractor

Extracts and validates structured data from scientific PDF collections for systematic reviews and meta-analyses.

Dataset Splitter & ML Partitioning

Automates the partitioning of datasets into optimized training, validation, and testing subsets for machine learning workflows.

Lyra AI Prompt Optimizer

Transforms vague natural language inputs into precision-engineered prompts for Claude, ChatGPT, Gemini, and other large language models.

D3.js Data Visualization

Builds interactive, publication-quality data visualizations using the D3.js library for any JavaScript environment.

Machine Learning Model Trainer

Automates the end-to-end machine learning lifecycle from data analysis and model selection to training and performance evaluation.

Local Text-to-Speech

Generates high-quality speech audio locally on Apple Silicon using MLX acceleration and the Kokoro model.

Zotero RAG Library Search

Powers semantic search and contextual retrieval across local libraries of academic papers and markdown documents.

Quantitative Sociology Findings Writer

Drafts publication-ready Results sections for quantitative sociology research based on established academic patterns.

R Statistical Analyst for Sociology

Conducts publication-ready quantitative sociological research using phased R workflows and rigorous econometric methods.

Sociology Prompt Optimizer

Optimizes LLM prompts for high-accuracy text classification through a systematic, evaluation-driven workflow.

Systematic Literature Search

Automates systematic literature reviews for sociology and academic research using the OpenAlex API and structured screening workflows.

Gemini CLI Integration

Facilitates seamless interaction with the Gemini CLI to leverage Google Gemini models directly within the Claude Code environment.

Academic Reading Agent

Automates the creation of structured markdown reading notes from academic PDFs and EPUBs for sociology and social science research.

Stata Statistical Analyst

Conducts rigorous, publication-ready statistical analysis in Stata for sociology and social science research.

MLX LM Integration

Simplifies running, converting, and serving Large Language Models on Apple Silicon using the MLX framework.

Sociology Text Analyst

Conducts systematic computational text analysis for sociology research using R or Python with a focus on validation and reproducibility.

Qualitative Sociology Findings Writer

Drafts publication-ready methods and findings sections for qualitative research using advanced evidence presentation strategies.

Context Retrieval for AI Memory

Retrieves relevant past episodes and patterns from episodic memory to inform AI decision-making and task execution.

PyDESeq2 RNA-Seq Analysis

Performs differential gene expression analysis on bulk RNA-seq data using the Python implementation of DESeq2.

BioServices Bioinformatics

Accesses and integrates data from over 40 bioinformatics web services and databases using a unified Python API.

Astropy for Astronomy

Provides comprehensive Python tools for astronomical data analysis, including celestial coordinates, physical units, and FITS file manipulation.

Dataset Splitter for ML

Automates the partitioning of datasets into training, validation, and testing sets to streamline machine learning workflows.

Google Gemini Integration

Integrates Google Gemini's advanced coding models into Claude Code for high-context refactoring, deep analysis, and automated file editing.

BioGeoBEARS Biogeographic Analysis

Sets up and executes probabilistic inference of ancestral geographic ranges on phylogenetic trees using BioGeoBEARS in R.

HMDB Scientific Database

Accesses the Human Metabolome Database to retrieve chemical properties, clinical biomarkers, and spectral data for metabolomics research.

Hypogenic Hypothesis Generation

Automates scientific hypothesis generation and testing by combining observational data with literature insights using large language models.

RDKit Cheminformatics

Provides comprehensive tools for molecular analysis, chemical property calculation, and 3D structure generation within scientific research workflows.