Data Science & ML Agent Skills

ArXiv Paper Reader

Downloads, parses, and summarizes ArXiv research papers by analyzing their raw LaTeX source code for deep technical insights.

ML Model Deployment

Deploy machine learning models into production environments using robust APIs, containerization, and MLOps workflows.

Clustering & Pattern Discovery

Discover hidden structures and anomalies in unlabeled data using advanced unsupervised learning algorithms and dimensionality reduction.

Advanced Excel & Financial Modeling

Automates professional spreadsheet creation, data analysis, and financial modeling with rigorous formula integrity and industry-standard formatting.

Perplexity Deep Research Automation

Automates deep academic research using the Perplexity Deep Research API to generate cited, evidence-based reports.

Open Targets Drug Discovery

Accesses the Open Targets Platform to identify therapeutic targets, analyze disease associations, and evaluate drug tractability.

Excel Spreadsheet Analysis & Modeling

Automates the creation, editing, and analysis of professional-grade Excel spreadsheets with dynamic formulas and industry-standard financial formatting.

LabArchives Integration

Integrates with LabArchives Electronic Lab Notebook (ELN) via REST API to automate research documentation, data uploads, and notebook management.

XGBoost & LightGBM ML Toolkit

Implements industry-standard gradient boosting algorithms for high-performance machine learning on tabular and structured datasets.

Cirq Quantum Computing

Builds, simulates, and executes quantum circuits on simulators and hardware providers using Google's open-source Cirq framework.

Ericsson RAN Feature Processor

Optimizes Ericsson RAN features through Managed Object intelligence and advanced parameter correlation analysis.

OMERO Microscopy Integration

Manages and analyzes microscopy image data within the OMERO platform using the Python API for scientific workflows.

Molfeat Molecular Featurization

Converts chemical structures into numerical representations for machine learning using over 100 specialized featurizers and pretrained models.

DeepChem Molecular ML

Simplifies molecular machine learning workflows for drug discovery, property prediction, and materials science using DeepChem's specialized toolsets.

PennyLane Quantum Computing

Develops and optimizes quantum machine learning models and circuits across multiple hardware platforms using automatic differentiation.

deepTools NGS Analysis

Processes and visualizes high-throughput sequencing data to generate publication-quality genomic insights and quality control reports.

Statistical Analysis for Research

Performs comprehensive statistical hypothesis testing, regression analysis, and Bayesian modeling with automated assumption checking and APA-style reporting.

Stable Baselines3 Reinforcement Learning

Implements and optimizes reinforcement learning workflows using Stable Baselines3 to train reliable RL agents and design custom Gym environments.

Scientific Critical Thinking

Evaluates scientific research rigor and methodology through systematic analysis of experimental design, statistical validity, and potential biases.

REDUCE CRACK Equation Solver

Solves overdetermined algebraic, ODE, and PDE systems using the CRACK package in the REDUCE computer algebra system.

Pymatgen Materials Science

Facilitates advanced materials analysis, crystal structure manipulation, and computational workflows using the Python Materials Genomics library.

Vaex Big Data Analysis

Processes and analyzes massive tabular datasets with billions of rows using out-of-core DataFrame operations and lazy evaluation.

Metabolomics Workbench Database

Integrates with the NIH Metabolomics Workbench REST API to query metabolite data, standardized nomenclature, and experimental studies for biomarker discovery.

ClinicalTrials.gov Database

Accesses the ClinicalTrials.gov API v2 to search, filter, and export global clinical research data for medical analysis.

Scientific Brainstorming

Facilitates collaborative research ideation by generating hypotheses, identifying research gaps, and exploring interdisciplinary connections for scientific problem-solving.

AI Ethics & Fairness Validator

Audits machine learning models and datasets to identify biases and ensure ethical compliance through fairness metrics and mitigation strategies.

RDKit Cheminformatics

Provides comprehensive cheminformatics capabilities for molecular analysis, manipulation, and drug discovery workflows.

Ensembl Genome Database Integration

Accesses the Ensembl REST API to retrieve genomic sequences, gene annotations, and variant data for over 250 species.

Molecular Dynamics Simulation Runner

Executes production-grade molecular dynamics simulations using MDClaw and OpenMM with automated equilibration and HPC support.

MD Prepare: Molecular Dynamics Setup

Streamlines the end-to-end preparation of molecular dynamics simulations using MDClaw CLI tools.