Data Science & ML Agent Skills

ChIP-seq Biological Quality Control

Performs specialized biological validation for ChIP-seq data by calculating cross-correlation metrics and fraction of reads in peaks.

Gioia Methodology Framework

Builds and validates the three-level Gioia data structure for systematic qualitative research analysis and academic publication.

Directed Interval Logic

Axiomatizes the directed interval 0 → 1 to model irreversible processes and time-directed homotopy in synthetic infinity-categories.

Paradox Navigation

Resolves conflicting research patterns and theoretical tensions using contemplative, non-dual reasoning frameworks.

ATAC-seq Footprint Analysis

Performs transcription factor footprinting and differential binding detection on ATAC-seq data using the TOBIAS framework.

Scientific Critical Thinking

Evaluates research rigor and scientific claims by assessing methodology, statistical validity, and potential biases using standardized frameworks.

SageMaker Result Downloader

Automates the retrieval of SageMaker backtest results from Amazon S3 for local analysis and performance comparison.

Hotvect Training Setup

Streamlines the configuration and validation of Hotvect algorithm training runs for Vowpal Wabbit.

Algorithmic Trading Execution Patterns

Optimizes trade execution using advanced algorithms like TWAP, VWAP, and Iceberg orders to minimize market impact and slippage.

Hotvect Data Dependency Downloader

Automates the retrieval of training and test data dependencies from S3 for local machine learning model development and backtesting.

Curiosity-Driven Learning Agent

Implements intrinsic motivation for AI agents by rewarding compression progress and the discovery of learnable patterns.

Condensed ANIMA QC

Manages quantum-classical network transitions and state conservation using s-expressions across polyglot computing environments.

Polars Portfolio Backtester

Performs ultra-fast portfolio backtesting and trading strategy analysis using the Polars library.

Cognitive Superposition

Synthesizes multiple advanced theoretical frameworks from world-class researchers to solve complex problems through high-level meta-reasoning.

Causal Inference System 2

Implements interventional and counterfactual reasoning patterns for deliberate System 2 deep learning and causal world modeling.

Hotvect Debug Command Storage

Captures and stores failed Hotvect command invocations as executable shell scripts for seamless debugging and reproduction.

Deep Learning Engineering

Builds, optimizes, and deploys production-grade neural networks using PyTorch, TensorFlow, and modern transformer architectures.

Data Engineering & ETL Tools

Automates production-grade ETL pipelines and data orchestration using industry-standard tools like Airflow, dbt, and Prefect.

Scientific Critical Thinking

Evaluates research rigor, methodology, and statistical validity to perform critical analysis of scientific claims.

ETE Toolkit for Phylogenomics

Manipulates, analyzes, and visualizes phylogenetic trees and genomic data with the Environment for Tree Exploration (ETE) framework.

MuJoCo Scene Builder

Composes complex 3D environments and terrains for robotic simulation and reinforcement learning training.

K-Scale Robotics Ecosystem

Provides a unified framework for humanoid robot development, reinforcement learning training, and sim-to-real deployment.

Polynomial Operads & Compositional AI

Integrates polynomial functors and category-theoretic operads to model complex interaction patterns and dynamical systems within AI workflows.

C++20 Numerical Patterns

Provides standardized C++20 implementations for high-performance numerical computing, matrix operations, and parallel I/O.

NeuroKit2 Biosignal Analysis

Processes and analyzes complex physiological signals including ECG, EEG, and EDA for psychophysiology research and medical data science.

Functional Enrichment Analysis

Performs Gene Ontology and KEGG pathway enrichment analysis from genomic regions or gene lists with automated R-based visualizations.

IES Polyglot Social Analytics

Orchestrates a polyglot environment for social network analysis and multimedia processing using Clojure, Julia, and DuckDB.

ToolUniverse Scientific Workflow Suite

Enables Claude to perform complex scientific research by providing access to over 600 bioinformatics, genomics, and cheminformatics tools.

Regulatory Community Analysis for ChIA-PET

Analyzes protein-mediated chromatin interactions to identify and visualize regulatory communities from ChIA-PET datasets.

SAP Data Intelligence Cloud Developer

Streamlines the development of data processing pipelines, ABAP integrations, and machine learning scenarios within SAP Data Intelligence Cloud.