Data Science & ML Agent Skills

Pymoo Optimization

Implements multi-objective and single-objective optimization algorithms to solve complex engineering and mathematical problems.

Zarr Python Scientific Data Management

Manages large N-dimensional arrays with chunking and compression for high-performance scientific computing and cloud storage.

Marimo Development

Builds reactive Python notebooks, interactive dashboards, and data-driven applications using the marimo framework.

Scientific Brainstorming

Facilitates creative research ideation and exploratory scientific problem-solving through structured conversational partnership.

Marimo Notebook Assistant

Builds and optimizes reactive Python notebooks using marimo for interactive data analysis, dashboards, and machine learning workflows.

Advanced Excel & Spreadsheet Manager

Enables professional-grade spreadsheet creation, financial modeling, and data analysis with automated formula verification and industry-standard formatting.

OpenAlex Academic Search & Analysis

Query and analyze over 240 million scholarly works using the OpenAlex database for literature reviews and bibliometric studies.

SimPy Discrete-Event Simulation

Builds process-based discrete-event simulations in Python for modeling complex systems with shared resources.

Vaex Big Data Analytics

Processes and analyzes massive tabular datasets exceeding available RAM using out-of-core DataFrames and lazy evaluation.

NetworkX Graph Analysis

Analyzes and visualizes complex network structures and graph data within Python environments.

FluidSim CFD

Conducts high-performance computational fluid dynamics (CFD) simulations using Python-based pseudospectral methods and MPI parallelization.

Scientific Analysis & Reporting

Generates structured, data-driven scientific research reports by analyzing repository data and verifying metrics against technical standards.

Structural Biology Analysis

Analyzes and validates protein structures, interprets AlphaFold predictions, and performs comparative molecular modeling.

Matplotlib Visualization

Generates highly customizable, publication-quality static and interactive plots using Python's foundational visualization library.

Genomics Analysis

Provides specialized strategies and code patterns for genomics and transcriptomics data analysis, visualization, and biological interpretation.

Metabolomics Analysis

Provides expert strategies and domain knowledge for analyzing metabolic pathways, flux measurements, and biochemical mechanisms.

OpenRouter Multi-Model Access

Access and benchmark hundreds of LLM models through a unified API to optimize for cost, performance, and response quality.

Denario AI Research Assistant

Automates end-to-end scientific research workflows from data analysis and hypothesis generation to publication-ready LaTeX papers.

Bayesian Modeling in R

Facilitates advanced Bayesian statistical modeling in R using Stan-based packages for comprehensive data analysis and inference.

Tidymodels Workflow Patterns

Implements end-to-end machine learning pipelines in R using the tidymodels ecosystem, from data splitting to model deployment.

Genomics Analysis in R

Simplifies complex bioinformatics workflows in R using Bioconductor for RNA-seq, microarray, and single-cell genomic analysis.

Tidymodels Hyperparameter Tuning

Optimizes machine learning models using comprehensive hyperparameter tuning patterns within the R Tidymodels ecosystem.

UMAP Dimensionality Reduction

Performs fast, scalable nonlinear dimensionality reduction for high-dimensional data visualization, clustering, and feature engineering.

Tidymodels Model Evaluation

Evaluates machine learning model performance using R's yardstick and tidymodels ecosystem for robust classification and regression analysis.

Clinical Trials Statistical Methods

Performs comprehensive clinical trial design and statistical analysis in R, covering sample size calculation, randomization, and regulatory-compliant modeling.

CSV Data Summarizer

Analyzes CSV files automatically to generate comprehensive statistical summaries and context-aware visualizations using Python and pandas.

Theory2 Physics & Math Tooling

Performs advanced mathematical physics computations, symbolic algebra, and automated theorem proving using the Theory2 suite.

A2A Executor Patterns

Implements standardized Agent-to-Agent (A2A) protocol executors with production-ready patterns for task management and agent coordination.

Scientific Visualization & Figure Design

Generates publication-ready scientific figures and multi-panel layouts following strict journal specifications for Nature, Science, and Cell.

Scientific Exploratory Data Analysis

Performs automated exploratory data analysis and generates comprehensive reports for over 200 scientific file formats.