Data Science & ML Agent Skills

ClinicalTrials.gov Search & Analytics

Facilitates programmatic access to the ClinicalTrials.gov API v2 to search, filter, and export global clinical study data for research and patient matching.

FDA Database Access

Accesses and analyzes comprehensive FDA regulatory data for drugs, medical devices, and food safety through the openFDA API.

Zarr Python Scientific Computing

Manages large-scale N-dimensional arrays with chunking, compression, and cloud-native storage integration.

LabArchives Integration

Automates electronic lab notebook management through the LabArchives REST API for research documentation, data backups, and tool integration.

Scientific Schematics & Diagrams

Generates publication-quality scientific diagrams and architectural schematics using AI-driven iterative refinement and quality auditing.

PubMed Database Access

Facilitates advanced biomedical literature research and programmatic access to the PubMed database using E-utilities and complex query syntax.

Plotly Scientific Visualization

Generates interactive, publication-quality scientific and statistical visualizations using the Plotly Python library.

PyMC Bayesian Modeling

Facilitates advanced Bayesian statistical modeling and probabilistic programming using the PyMC and ArviZ ecosystems.

DeepChem Molecular Machine Learning

Empowers molecular machine learning and drug discovery through advanced chemical featurization, property prediction, and Graph Neural Networks.

FlowIO FCS File Handler

Parses and manages Flow Cytometry Standard (FCS) files, enabling seamless conversion to NumPy arrays and metadata extraction for bioinformatics workflows.

GeoPandas Geospatial Analysis

Extends pandas to enable powerful spatial operations and vector data analysis for complex geographic workflows.

NetworkX Graph Analysis

Builds, analyzes, and visualizes complex network structures and graph algorithms using Python's NetworkX library.

PennyLane Quantum Computing

Enables building, training, and optimizing quantum circuits and hybrid quantum-classical models using automatic differentiation and hardware-agnostic execution.

Polars High-Performance Dataframes

Accelerates data analysis workflows using Polars' lightning-fast, expression-based API and lazy evaluation framework.

Dask Parallel Computing

Accelerates and scales Python data processing by providing parallel and distributed computing capabilities for NumPy, pandas, and custom workflows.

PyDESeq2 Gene Expression Analysis

Performs differential gene expression analysis on bulk RNA-seq data using Python's DESeq2 implementation.

Matplotlib Scientific Visualization

Generates publication-quality scientific plots and data visualizations using Python's foundational plotting library.

Datamol Cheminformatics

Simplifies molecular cheminformatics and drug discovery workflows with a Pythonic abstraction layer for RDKit.

FluidSim CFD Framework

Simulates high-performance computational fluid dynamics using pseudospectral methods and Python-based solvers.

Pymoo Multi-Objective Optimization

Solves complex multi-objective optimization problems using evolutionary algorithms to find Pareto-optimal solutions.

Medicinal Chemistry Toolkit

Filters and prioritizes molecular libraries using medicinal chemistry rules, structural alerts, and drug-likeness metrics.

Molfeat - Molecular Featurization Hub

Simplifies molecular featurization for machine learning by providing a unified interface for over 100 descriptors, fingerprints, and pretrained embeddings.

DiffDock Molecular Docking

Predicts 3D protein-ligand binding poses and confidence scores using state-of-the-art diffusion models for structure-based drug design.

Gtars Genomic Toolkit

Performs high-performance genomic interval analysis and sequence tokenization using Rust-powered tools and Python bindings.

Matchms

Processes and analyzes mass spectrometry data using advanced spectral similarity metrics and automated metadata harmonization.

Pymatgen Materials Science

Analyzes crystal structures, generates phase diagrams, and integrates with the Materials Project for advanced computational materials science.

ETE Toolkit for Phylogenetics

Manipulates, analyzes, and visualizes phylogenetic trees and hierarchical data using the Environment for Tree Exploration (ETE) framework.

Bioinformatics & Genomic Data (gget)

Simplifies bioinformatics workflows by providing unified access to over 20 genomic and proteomic databases for sequence analysis and protein modeling.

deepTools NGS Analysis

Facilitates comprehensive Next-Generation Sequencing (NGS) data processing, quality control, and publication-quality visualization.

Adaptyv Protein Testing

Connects Claude to the Adaptyv cloud laboratory platform for automated protein design validation and experimental testing.