Data Science & ML Agent Skills

FlowIO Cytometry Handler

Parses and creates Flow Cytometry Standard (FCS) files for seamless integration with Python data science workflows.

ALife Simulation & Artificial Life Research

Facilitates the research, modeling, and implementation of complex artificial life systems, from cellular automata to evolutionary dynamics.

BioRxiv Research Database

Searches and retrieves life sciences preprints from the bioRxiv database with support for metadata extraction and PDF downloads.

PufferLib Reinforcement Learning

Accelerates reinforcement learning workflows through high-performance parallel environment simulation and optimized PPO training.

Advanced Excel & Data Analysis

Automates the creation, editing, and analysis of professional Excel spreadsheets with advanced formula support and financial modeling standards.

Turing Chemputer

Automates programmable chemical synthesis using the XDL language and modular robotic hardware instructions.

Chaotic Attractor Dynamics

Analyzes complex dynamical systems and strange attractors with sensitive dependence on initial conditions.

Worldmat TiDAR Engine

Implements a 3×3×3 matrix execution framework using the TiDAR pattern with GF(3) conservation invariants.

Adaptive Walk-Forward Epoch Selection

Optimizes training epochs for machine learning models using Walk-Forward Efficiency and efficient frontier analysis.

Range Bar Evaluation Metrics

Evaluates financial models using state-of-the-art metrics specifically designed for range bar (price-based sampling) data.

Sheaf-Theoretic Coordination

Implements topological sheaf theory to manage distributed coordination and data consistency across multi-agent systems.

Langevin Dynamics Analysis

Analyzes neural network training dynamics using Stochastic Differential Equations (SDEs) to optimize convergence, temperature control, and exploration.

Möbius Inversion & Poset Analysis

Calculates Möbius functions and alternating sums on posets to solve complex combinatorial, graph theory, and network centrality problems.

R Object-Oriented Programming

Guides R developers in choosing and implementing the optimal OOP system, including S7, S3, S4, and vctrs.

Single-Cell Genomics Analysis (scvi-tools)

Analyzes single-cell omics data using probabilistic models for tasks like batch correction, dimensionality reduction, and differential expression.

OpenAlex Academic Database

Queries and analyzes over 240 million scholarly works, authors, and institutions using the OpenAlex API.

Context Engineering Principles

Optimizes LLM performance by implementing token-efficient context management strategies for AI agents and tools.

DrugBank Database Explorer

Accesses and analyzes comprehensive pharmaceutical data from DrugBank for drug discovery, pharmacology research, and chemical informatics.

Reinforcement Learning Gyms

Standardizes and catalogs diverse Gymnasium and OpenAI Gym environments for reinforcement learning across physics, robotics, chemistry, and gaming domains.

Council Consultation Ensemble

Leverages a multi-model ensemble to provide diverse, parallel insights from GPT, Gemini, and Claude for complex problem-solving.

UMAP Dimensionality Reduction

Performs fast, scalable non-linear dimensionality reduction for high-dimensional data visualization, clustering preprocessing, and feature engineering.

OMG Tension Resolver

Resolves architectural and algorithmic paradigm tensions using OpenModelica Microgrid Gym dynamics as a physical substrate.

QuTiP Quantum Simulations

Simulates and analyzes quantum mechanical systems using the Quantum Toolbox in Python (QuTiP).

Mojo SIMD Optimization

Optimizes Mojo tensor and array operations using SIMD vectorization to maximize computational throughput on modern hardware.

Topos Unified Framework

Unifies topos-theoretic resources, categorical databases, and infinity-topoi for advanced mathematical modeling and cognitive agent development.

BRENDA Enzyme Database Explorer

Accesses the comprehensive BRENDA enzyme database via SOAP API to retrieve kinetic parameters, reaction equations, and biochemical data for metabolic research.

Louisville Quantum Gravity

Analyzes and implements stationary measures for the KPZ equation using Liouville quantum gravity and matrix product ansatz.

Hypogenic AI Hypothesis Generator

Automates scientific hypothesis generation and empirical testing using large language models and research literature integration.

Data Commons Client

Connects Claude to the Data Commons Knowledge Graph to retrieve and analyze global statistical, economic, and environmental data.

COBRApy Metabolic Modeling

Performs constraint-based reconstruction and analysis (COBRA) of metabolic models for systems biology and metabolic engineering.