Data Science & ML Agent Skills

ClinPGx Pharmacogenomics

2,188

Queries clinical pharmacogenomics data to provide insights into gene-drug interactions, CPIC guidelines, and genetic variants for precision medicine.

STRING Protein Interaction Database

2,188

Analyzes protein-protein interaction networks and performs functional enrichment using the STRING database's 20 billion interactions.

KEGG Database Connector

2,188

Facilitates direct REST API access to the KEGG database for biological pathway analysis, gene mapping, and molecular interaction research.

UniProt Protein Database

2,188

Accesses the UniProt REST API to search, retrieve, and map protein sequence and functional data directly within scientific workflows.

Dask Parallel Computing

2,188

Enables parallel and distributed computing in Python to scale data processing beyond memory limits.

Bioinformatics & Genomic Data (gget)

2,188

Provides unified, rapid access to over 20 genomic databases and bioinformatics analysis tools for DNA and protein research.

BioServices Bioinformatics Tool

2,188

Streamlines access to over 40 bioinformatics web services and databases for biological data retrieval and cross-database analysis.

Statsmodels Statistical Analysis

2,188

Provides a comprehensive toolkit for rigorous statistical modeling, econometric analysis, and time-series forecasting within the Claude environment.

Benchling R&D Integration

2,188

Automates Benchling R&D platform operations including biological sequence management, inventory tracking, and electronic lab notebook documentation.

Metabolomics Workbench Database

2,188

Accesses the NIH Metabolomics Workbench to query over 4,200 studies, standardize metabolite nomenclature, and perform mass spectrometry searches.

Scientific Data Visualization

2,188

Generates publication-ready scientific figures and multi-panel layouts using Matplotlib, Seaborn, and Plotly.

Pysam Genomic Toolkit

2,188

Manipulates genomic datasets including SAM, BAM, VCF, and FASTA files through a Pythonic interface to htslib.

TorchDrug Discovery ML

2,188

Simplifies graph-based machine learning for drug discovery, protein modeling, and molecular science using the TorchDrug framework.

NetworkX Analysis

2,188

Builds, analyzes, and visualizes complex networks and graph data structures using the comprehensive NetworkX library for Python.

PyMC Bayesian Modeling

2,188

Builds, fits, and validates robust Bayesian models using PyMC's modern probabilistic programming interface.

Polars Data Analysis

2,188

Optimizes data processing workflows with high-performance Polars expressions, lazy evaluation, and efficient DataFrame manipulations.

Qiskit Quantum Computing

2,188

Builds, optimizes, and executes quantum circuits and algorithms on simulators or real hardware using the Qiskit framework.

Modal Serverless Python

2,188

Runs Python code in the cloud with serverless containers, autoscaling GPUs, and minimal infrastructure management.

PyDESeq2 Analysis

2,188

Performs comprehensive differential gene expression analysis from bulk RNA-seq count data using the Python implementation of DESeq2.

Seaborn Statistical Visualization

2,188

Generates publication-quality statistical graphics and complex data visualizations using the Seaborn Python library.

Mass Spectrometry Analysis (Matchms)

2,188

Processes and analyzes mass spectrometry data using the Matchms library for spectral similarity and metadata harmonization.

Pydicom

2,066

Manages medical imaging data by reading, writing, and anonymizing DICOM files while providing guidance on pixel extraction and metadata manipulation.

OpenAlex Database

2,066

Queries and analyzes millions of scholarly works, authors, and institutions using the OpenAlex API to facilitate comprehensive bibliometric research.

PyHealth Healthcare AI

2,066

Develops, tests, and deploys healthcare-specific machine learning models using clinical data, medical coding systems, and physiological signals.

Histolab

2,066

Processes digital pathology whole slide images (WSI) through automated tissue detection, tile extraction, and specialized image preprocessing.

Denario Scientific Research

2,066

Automates the end-to-end scientific research lifecycle from data-driven hypothesis generation to the production of publication-ready LaTeX manuscripts.

Stable Baselines3

2,066

Implements reinforcement learning workflows including agent training, custom environment design, and parallelized experimentation using the Stable Baselines3 library.

PathML Computational Pathology

2,066

Analyzes whole-slide pathology images and multiparametric imaging data using advanced machine learning, spatial graph construction, and automated preprocessing pipelines.

SimPy Simulation

2,066

Models complex discrete-event systems where entities interact with shared resources over time using process-based Python simulations.

Exploratory Data Analysis

2,066

Conducts automated exploratory data analysis on over 200 scientific file formats to extract metadata, assess quality, and generate comprehensive documentation reports.