Data Science & ML Agent Skills

Stable Baselines3 RL Suite

Implements production-ready reinforcement learning algorithms using a unified, scikit-learn-style API for efficient agent training and evaluation.

Hypogenic Scientific Hypothesis Discovery

Automates scientific hypothesis generation and testing from tabular datasets using LLMs and literature integration.

xAI Agent Tools for Grok

Enables autonomous tool calling for Grok models including X search, web search, and Python code execution.

K-Dense Scientific Research Bridge

Connects Claude Scientific Skills with the K-Dense Web platform to handle complex, multi-agent scientific research workflows.

SHAP Model Interpretability

Explains machine learning model predictions and feature importance using Shapley Additive exPlanations for transparent AI.

Alpha Vantage Financial Data

Accesses comprehensive financial market data including stocks, forex, cryptocurrency, and technical indicators for automated analysis.

Agentica SDK

Builds and orchestrates stateful Python-based AI agents with MCP integration and multi-agent patterns.

ClinicalTrials.gov Search & Integration

Queries the ClinicalTrials.gov API v2 to search, filter, and extract comprehensive clinical research data and trial details.

Bioinformatics Data Query (gget)

Accesses and analyzes data from over 20 genomic and proteomic databases through a unified interface.

ClinPGx Pharmacogenomics Database

Queries gene-drug interactions, clinical guidelines, and genetic variant annotations from the ClinPGx database for precision medicine applications.

PyDESeq2 Gene Analysis

Performs differential gene expression analysis for bulk RNA-seq data using Python-based DESeq2 workflows.

xAI Sentiment Analysis

Performs real-time sentiment analysis on Twitter/X content using Grok's native integration and natural language processing.

Matplotlib Visualization

Generates and customizes professional-grade static, animated, and interactive visualizations using Python's foundational plotting library.

Geniml: Genomic Machine Learning

Builds machine learning models and embeddings for genomic interval data to enable similarity searches, clustering, and single-cell analysis.

LatchBio Integration

Streamlines the development, deployment, and management of serverless bioinformatics workflows on the LatchBio platform.

Polars Data Engineering

Optimizes data processing and analysis workflows using the high-performance Polars DataFrame library.

FluidSim CFD Framework

Simulates high-performance computational fluid dynamics using pseudospectral methods and optimized Python solvers.

deepTools NGS Analysis

Analyzes and visualizes high-throughput sequencing data including ChIP-seq, RNA-seq, and ATAC-seq.

Gemini 3 Pro Image Generation

Generates high-resolution 4K images, renders precise text, and performs conversational image editing using the Gemini 3 Pro Image model.

PyTorch Geometric (PyG)

Develops and trains Graph Neural Networks (GNNs) using the PyTorch Geometric library for irregular data structures and geometric deep learning.

KEGG Database Connector

Provides direct access to the KEGG REST API for biological pathway analysis, gene mapping, and metabolic research.

PyTorch Lightning

Streamlines deep learning development by organizing PyTorch code into scalable, boilerplate-free Lightning modules and automated training workflows.

ETE Phylogenetic Toolkit

Provides comprehensive tools for phylogenetic tree manipulation, evolutionary analysis, and high-quality biological data visualization.

OMERO Microscopy Integration

Manages and analyzes microscopy data through the OMERO Python API for scientific imaging and high-content screening workflows.

Scientific Critical Thinking

Evaluates scientific research rigor and evidence quality using standardized frameworks like GRADE and Cochrane.

Molfeat Molecular Featurization

Transforms chemical structures into machine learning-ready numerical features using a library of over 100 featurizers and pretrained models.

Python Project Structure Refactor

Transforms monolithic Python research code and notebooks into modular, production-ready package structures.

Unit-Aware Computation

Performs precise unit conversions, dimensional analysis, and unit-aware arithmetic using the Pint library.

SimPy Simulation Engine

Builds process-based discrete-event simulations in Python to model complex systems with resource contention and time-based events.

Embedding & Chunking Strategies

Optimizes vector search and RAG applications through intelligent embedding model selection and advanced document chunking strategies.