Data Science & ML Agent Skills

LabArchives Integration

Integrates with LabArchives Electronic Lab Notebook (ELN) via REST API to automate research documentation, data uploads, and notebook management.

Open Targets Drug Discovery

Accesses the Open Targets Platform to identify therapeutic targets, analyze disease associations, and evaluate drug tractability.

Excel Spreadsheet Analysis & Modeling

Automates the creation, editing, and analysis of professional-grade Excel spreadsheets with dynamic formulas and industry-standard financial formatting.

OMERO Microscopy Integration

Manages and analyzes microscopy image data within the OMERO platform using the Python API for scientific workflows.

Cirq Quantum Computing

Builds, simulates, and executes quantum circuits on simulators and hardware providers using Google's open-source Cirq framework.

Ericsson RAN Feature Processor

Optimizes Ericsson RAN features through Managed Object intelligence and advanced parameter correlation analysis.

Molfeat Molecular Featurization

Converts chemical structures into numerical representations for machine learning using over 100 specialized featurizers and pretrained models.

DeepChem Molecular ML

Simplifies molecular machine learning workflows for drug discovery, property prediction, and materials science using DeepChem's specialized toolsets.

PennyLane Quantum Computing

Develops and optimizes quantum machine learning models and circuits across multiple hardware platforms using automatic differentiation.

deepTools NGS Analysis

Processes and visualizes high-throughput sequencing data to generate publication-quality genomic insights and quality control reports.

REDUCE CRACK Equation Solver

Solves overdetermined algebraic, ODE, and PDE systems using the CRACK package in the REDUCE computer algebra system.

Statistical Analysis for Research

Performs comprehensive statistical hypothesis testing, regression analysis, and Bayesian modeling with automated assumption checking and APA-style reporting.

Scientific Critical Thinking

Evaluates scientific research rigor and methodology through systematic analysis of experimental design, statistical validity, and potential biases.

Stable Baselines3 Reinforcement Learning

Implements and optimizes reinforcement learning workflows using Stable Baselines3 to train reliable RL agents and design custom Gym environments.

Pymatgen Materials Science

Facilitates advanced materials analysis, crystal structure manipulation, and computational workflows using the Python Materials Genomics library.

Vaex Big Data Analysis

Processes and analyzes massive tabular datasets with billions of rows using out-of-core DataFrame operations and lazy evaluation.

Metabolomics Workbench Database

Integrates with the NIH Metabolomics Workbench REST API to query metabolite data, standardized nomenclature, and experimental studies for biomarker discovery.

ClinicalTrials.gov Database

Accesses the ClinicalTrials.gov API v2 to search, filter, and export global clinical research data for medical analysis.

Constraint Satisfaction Solver

Solves complex logic puzzles and scheduling problems using Peter Norvig's propagate-then-search algorithmic pattern.

Vercel AI SDK Assistant

Simplifies the development of AI-powered features and autonomous agents using the Vercel AI SDK.

AI Prompt Optimizer

Refines and compresses LLM prompts to minimize token usage and maximize response quality.

Frontier-Based Graph Exploration

Implements flexible graph and tree traversal patterns with configurable DFS, BFS, and randomized exploration strategies.

Scientific Brainstorming

Facilitates collaborative research ideation by generating hypotheses, identifying research gaps, and exploring interdisciplinary connections for scientific problem-solving.

Side-by-Side Comparison Patterns

Visualizes code changes, algorithm results, and data states by displaying multiple outputs in parallel columns.

RDKit Cheminformatics

Provides comprehensive cheminformatics capabilities for molecular analysis, manipulation, and drug discovery workflows.

State-Driven Class Patterns

Encapsulates complex state management into robust class structures to handle transitions, backtracking, and algorithmic branching.

Priority Queue Implementation Patterns

Implements high-performance priority queues for pathfinding, scheduling, and stream processing using efficient heap-based structures.

Propagate-Then-Search Logic Pattern

Optimizes constraint satisfaction problem-solving by eliminating impossibilities through inference before initiating recursive search operations.

Ensembl Genome Database Integration

Accesses the Ensembl REST API to retrieve genomic sequences, gene annotations, and variant data for over 250 species.

Stable Matching & Gale-Shapley

Implements the Gale-Shapley algorithm to solve stable matching problems for two-sided markets like residency and admissions.