Data Science & ML Agent Skills

bioRxiv Research Database

Searches and retrieves life sciences preprints from the bioRxiv database by keywords, authors, and categories.

OpenAlex Scholarly Database

Accesses and analyzes over 240 million scholarly works, authors, and institutions via the OpenAlex API for automated scientific discovery.

TorchDrug for Molecular Science

Empowers Claude to perform graph-based drug discovery, molecular property prediction, and protein modeling using the TorchDrug framework.

ENA Genomics Data Access

Access and retrieve comprehensive nucleotide sequence data and metadata from the European Nucleotide Archive (ENA).

Arboreto GRN Inference

Infers gene regulatory networks from transcriptomics data using scalable algorithms like GRNBoost2 and GENIE3.

FDA Regulatory Data Analysis

Accesses and analyzes comprehensive FDA regulatory data for drugs, medical devices, and food safety through the openFDA API.

PubMed Database Access

Enables advanced searching and programmatic retrieval of biomedical literature from the PubMed database using E-utilities and MeSH terms.

Pymatgen Materials Science Toolkit

Provides comprehensive tools for materials analysis, crystal structure manipulation, and Materials Project database integration.

NCBI GEO Scientific Data Access

Accesses, searches, and retrieves gene expression and functional genomics data from the NCBI Gene Expression Omnibus (GEO).

NetworkX Analysis & Visualization

Analyzes and visualizes complex graph data structures using the comprehensive Python NetworkX library.

DrugBank Database Analysis

Integrates comprehensive pharmaceutical data from DrugBank for drug discovery, pharmacology research, and safety analysis.

PyOpenMS Mass Spectrometry Analysis

Processes and analyzes complex mass spectrometry data for proteomics and metabolomics workflows using the PyOpenMS library.

Clinical Decision Support Writer

Generates professional, publication-ready clinical decision support documents and biomarker-stratified cohort analyses in LaTeX format.

AnnData for Claude Code

Manages and analyzes annotated data matrices for single-cell genomics and large-scale biological datasets.

deepTools NGS Analysis

Processes and analyzes high-throughput sequencing data to generate publication-quality genomic visualizations and quality control reports.

Bioinformatics & Genomic Data Toolkit

Retrieves genomic, proteomic, and structural data from over 20 biological databases using a unified interface.

Medchem Scientific Discovery

Applies medicinal chemistry filters and drug-likeness rules to prioritize compound libraries for autonomous discovery.

Polars Data Engineering

Accelerates high-performance data analysis and manipulation using the lightning-fast Polars DataFrame library.

Vaex Big Data Analysis

Processes and analyzes massive tabular datasets exceeding available RAM using lazy, out-of-core DataFrame operations.

SymPy Symbolic Mathematics

Performs exact symbolic mathematics in Python, including algebraic solving, calculus, and matrix manipulations.

SimPy Discrete-Event Simulation

Models complex systems using process-based discrete-event simulation to optimize resources, queues, and time-based workflows.

LabArchives Integration

Automates electronic lab notebook workflows by providing programmatic access to LabArchives for research data management and documentation.

Scientific Peer Review & Critical Evaluation

Conducts systematic, rigorous reviews of scientific manuscripts and grant proposals by evaluating methodology, statistics, and reporting standards.

Data Commons Client

Accesses global statistical data from Data Commons for demographic, economic, and environmental analysis.

Scientific Statistical Analysis

Performs advanced statistical hypothesis testing, regression analysis, and Bayesian modeling with automated assumption checking and APA-style reporting.

Scientific Hypothesis Generation

Generates testable, evidence-based scientific hypotheses and structured experimental designs to accelerate autonomous discovery.

Scientific Peer Reviewer

Evaluates scientific manuscripts and grant proposals using a systematic toolkit for methodology, statistics, and reporting standards.

DNAnexus Genomics Integration

Streamlines the development, deployment, and management of bioinformatics pipelines and data on the DNAnexus cloud genomics platform.

Kosmos X-Ray

Explores and maps complex codebases using AST analysis to reduce token usage by 95% while maintaining structural visibility.

Scientific Exploratory Data Analysis

Performs comprehensive exploratory data analysis and generates detailed reports for over 200 scientific file formats.