Data Science & ML Agent Skills

BRENDA Enzyme Database Connector

Accesses the comprehensive BRENDA enzyme database to retrieve kinetic parameters, reaction equations, and biochemical data for metabolic research.

NeuroKit2 Biosignal Analysis

Processes and analyzes complex physiological signals including ECG, EEG, EDA, and more using the NeuroKit2 Python library.

Excel DCF Valuation Modeler

Builds professional investment banking-standard discounted cash flow (DCF) models in Excel with automated financial projections and sensitivity analysis.

Dask Parallel Computing

Scales Python data processing and scientific computing across multiple cores or clusters for datasets that exceed available memory.

Data Commons Client

Provides programmatic access to global statistical datasets including demographic, economic, and environmental indicators via the Data Commons API.

Ensembl Genome Database

Queries the Ensembl REST API to retrieve gene data, sequences, and variant analysis for over 250 species.

COBRApy Metabolic Modeling

Performs constraint-based metabolic modeling and systems biology simulations using the COBRApy framework.

Neural Network Builder

Constructs and configures custom neural network architectures including CNNs, RNNs, and Transformers directly within the Claude Code environment.

Excel LBO Modeler

Automates the creation of professional-grade Leveraged Buyout (LBO) models in Excel for private equity and investment analysis.

Codex CLI Integration

Integrates Codex CLI command patterns into Claude Code to enable advanced multi-agent planning and high-reasoning execution.

ML Model Explainability Tool

Provides deep insights and interpretability for machine learning models using advanced techniques like SHAP and LIME.

DrugBank Database Analysis

Accesses and analyzes comprehensive pharmaceutical data from DrugBank for research, drug discovery, and interaction analysis.

Astropy for Claude

Simplifies astronomical data analysis and astrophysical calculations using the comprehensive Astropy Python library.

PyMC Bayesian Modeling

Builds, fits, and validates robust Bayesian statistical models using the PyMC probabilistic programming framework.

RDKit Cheminformatics

Provides comprehensive cheminformatics capabilities for molecular analysis, structural manipulation, and computational chemistry workflows.

PyDESeq2 Gene Expression Analysis

Performs differential gene expression analysis for bulk RNA-seq data using the Python implementation of DESeq2.

Reactome Pathway Analysis

Facilitates biological pathway analysis and gene-mapping by querying the Reactome open-source database and REST API.

Excel & Spreadsheet Pro

Automates the creation, editing, and analysis of professional spreadsheets with support for complex formulas and financial modeling standards.

Citation Management

Manages academic citations and BibTeX entries by searching scholarly databases and validating metadata for research papers.

Matplotlib Scientific Visualization

Generates professional, publication-quality plots and charts using Python's foundational visualization library.

Scientific Schematics

Generates publication-quality scientific diagrams and neural network architectures using AI-driven iterative refinement.

Neural Network Builder

Constructs and configures custom neural network architectures including CNNs, RNNs, and Transformers directly within the Claude Code environment.

scvi-tools for Single-Cell Analysis

Implements probabilistic deep learning models for comprehensive single-cell omics data analysis and multimodal integration.

Denario Scientific Research Assistant

Automates the complete scientific research lifecycle from initial data analysis to publication-ready LaTeX manuscripts.

LLM Evaluation & Metrics

Implements rigorous evaluation frameworks for Large Language Model applications using automated metrics, LLM-as-judge patterns, and human feedback loops.

Llamafile Local LLM Manager

Configures and manages Mozilla Llamafile to run high-performance GGUF models locally with an OpenAI-compatible API.

BioServices Bioinformatics Toolbox

Provides programmatic access to over 40 bioinformatics web services and databases for integrated biological data analysis and workflow automation.

FiftyOne Dataset Inference

Runs machine learning model inference, including detection, classification, and segmentation, directly on FiftyOne datasets.

FiftyOne Model Evaluation

Evaluates computer vision model predictions against ground truth using industry-standard protocols like COCO and Open Images.

FiftyOne Dataset Import

Automates the detection and ingestion of computer vision datasets into FiftyOne with support for multimodal data and complex label formats.