Data Science & ML Agent Skills

DrugBank Database Analysis

Provides programmatic access and comprehensive analysis of the DrugBank database for pharmaceutical research and bioinformatics workflows.

Aeon Time Series Machine Learning

Provides specialized algorithms and workflows for advanced time series tasks including forecasting, classification, and anomaly detection.

ClinVar Database

Accesses and interprets the NCBI ClinVar archive to identify genomic variant clinical significance and pathogenicity classifications.

deepTools NGS Analysis

Automates Next-Generation Sequencing (NGS) data processing, quality control, and publication-quality visualization.

ClinicalTrials.gov Database

Queries the ClinicalTrials.gov API to search for medical studies, retrieve trial details, and export structured clinical research data.

DrugBank Database Integration

Accesses and analyzes comprehensive pharmaceutical data from DrugBank, including drug properties, interactions, targets, and chemical structures.

deepTools NGS Analysis

Processes and analyzes high-throughput sequencing data to generate publication-quality visualizations and quality control metrics for genomics research.

Bioinformatics & Genomics Toolkit (gget)

Provides unified access to 20+ genomic databases for sequence analysis, protein structure prediction, and rapid bioinformatics queries.

ClinVar Database Explorer

Queries and interprets genomic variant data from the NCBI ClinVar database to support clinical genetics and research workflows.

Data Visualization Plots

Generates publication-quality scientific visualizations and data plots locally using Python's Matplotlib and Seaborn libraries.

RAG Implementation Pro

Builds high-performance Retrieval-Augmented Generation systems using vector databases, semantic search, and advanced retrieval patterns.

Ensembl Genome Database

Queries the Ensembl REST API to retrieve gene annotations, sequences, variants, and comparative genomics data for over 250 species.

ClinVar Genomic Database Assistant

Interfaces with NCBI ClinVar to query, interpret, and process human genetic variant clinical significance data for genomic medicine.

ML Pipeline Workflow

Builds end-to-end MLOps pipelines for data preparation, model training, validation, and production deployment.

Flow Nexus Neural Networks

Trains and deploys sophisticated neural network architectures across distributed E2B sandbox environments.

DrugBank Database Analysis

Accesses and analyzes comprehensive pharmaceutical data from DrugBank including drug properties, interactions, and molecular structures.

Excel Master

Enables professional-grade spreadsheet creation, formula-driven financial modeling, and data analysis with automated error validation.

PyDESeq2 Analysis

Performs differential gene expression analysis on bulk RNA-seq data using the PyDESeq2 framework.

ML Pipeline Workflow

Builds end-to-end MLOps pipelines from data preparation through model training, validation, and production deployment.

Denario Scientific Research Automation

Automates the end-to-end scientific research lifecycle from data analysis and hypothesis generation to publication-ready LaTeX manuscripts.

LLM Performance Evaluation

Implements comprehensive evaluation strategies for LLM applications using automated metrics, human feedback, and benchmarking.

Reactome Database Integration

Integrates Reactome's open-source curated pathway database for biological pathway analysis, gene mapping, and systems biology research.

OpenAlex Academic Database

Queries and analyzes over 240 million scholarly works using the OpenAlex database for literature reviews and bibliometric studies.

Scientific Hypothesis Generation

Generates rigorous, testable scientific hypotheses and detailed experimental designs based on observations and existing literature.

PDF Report Generator

Generates professional, multi-page PDF reports with formatted text, tables, and embedded visualizations using the ReportLab library.

Matchms Mass Spectrometry Analysis

Processes and analyzes mass spectrometry data using Python-based spectral similarity metrics and metadata harmonization.

arXiv Search

Searches the arXiv preprint repository for scholarly articles across various scientific and technical domains.

Flow Nexus Neural Networks

Trains and deploys distributed neural networks within secure E2B sandbox environments using the Flow Nexus framework.

Arboreto GRN Inference

Infers large-scale gene regulatory networks from transcriptomics data using scalable machine learning algorithms like GRNBoost2 and GENIE3.

RDKit Cheminformatics

Provides comprehensive cheminformatics capabilities for molecular analysis, property calculation, and 3D coordinate generation.