Data Science & ML Claude 技能

Pymoo Optimization

Solves complex single and multi-objective optimization problems using evolutionary algorithms and Pareto front analysis.

Pysam Genomic Toolkit

Manipulates genomic datasets by reading and writing SAM, BAM, CRAM, VCF, and FASTA files using a Pythonic interface.

PyDESeq2 Gene Expression Analysis

Performs automated differential gene expression analysis on bulk RNA-seq data using the PyDESeq2 framework.

DiffDock Molecular Docking

Predicts accurate 3D protein-ligand binding poses using diffusion-based deep learning for computational drug discovery.

Protein Modeling & Design (ESM)

Empowers Claude to design, generate, and analyze protein sequences and structures using ESM3 and ESM C evolutionary scale models.

ClinVar Database Assistant

Queries the NCBI ClinVar database to retrieve, interpret, and process human genetic variant clinical significance data.

Biomni Biomedical Research

Executes complex biomedical research tasks across genomics, drug discovery, and clinical analysis using autonomous AI reasoning.

LaminDB Biology Data Management

Manages biological datasets with automated lineage tracking, ontology-based curation, and FAIR-compliant data lakehouse capabilities.

COBRApy Metabolic Modeling

Performs constraint-based reconstruction and analysis of metabolic models for systems biology and metabolic engineering.

Therapeutics Data Commons (PyTDC)

Provides AI-ready datasets and benchmarks for therapeutic machine learning and drug discovery tasks.

FlowIO Flow Cytometry Handler

Parses and manipulates Flow Cytometry Standard (FCS) files for scientific data preprocessing and analysis.

PyHealth

Builds and deploys specialized machine learning models for clinical healthcare data and electronic health records.

Scanpy Single-Cell Analysis

Performs comprehensive single-cell RNA-seq data analysis, including quality control, clustering, and visualization.

PathML Computational Pathology

Analyzes whole-slide images and multiparametric imaging data for advanced computational pathology and machine learning workflows.

scvi-tools Single-Cell Analysis

Analyzes single-cell omics data using deep generative models for batch correction, multi-omic integration, and probabilistic modeling.

Aeon Time Series Analysis

Performs advanced time series machine learning tasks including classification, forecasting, and anomaly detection using scikit-learn compatible APIs.

scikit-bio Bioinformatics & Ecology

Performs comprehensive bioinformatics analysis including sequence manipulation, phylogenetics, and microbial ecology statistics within Python.

Gtars Genomic Analysis

Accelerates genomic interval analysis and machine learning preprocessing using a high-performance Rust toolkit with Python bindings.

Resource Discovery & Strategy

Detects system hardware capabilities and provides optimized computational strategies for scientific and data-intensive tasks.

Excel & Spreadsheet Scientific Toolkit

Empowers Claude to create, analyze, and format professional Excel spreadsheets and financial models with automated formula recalculation.

Scientific Schematics & Diagrams

Generates publication-quality scientific diagrams, neural network architectures, and flowcharts using specialized Python libraries.

HMDB Scientific Database

Provides comprehensive access to the Human Metabolome Database for metabolite identification, chemical analysis, and biomarker discovery.

Reactome Pathway Database & Analysis

Accesses the Reactome database to perform biological pathway analysis, gene mapping, and enrichment studies for systems biology.

ClinicalTrials.gov Search & Analytics

Facilitates programmatic access to the ClinicalTrials.gov API v2 for advanced trial discovery, patient matching, and medical research data extraction.

LatchBio Bioinformatics Integration

Builds and deploys production-grade bioinformatics pipelines as serverless workflows on the Latch platform.

AlphaFold Protein Structure Database

Access and analyze over 200 million AI-predicted protein structures for structural biology and computational drug discovery.

Scientific Research Brainstorming

Facilitates creative scientific problem-solving by generating hypotheses and exploring interdisciplinary connections as a research ideation partner.

bioRxiv Research Database

Searches and retrieves life sciences preprints from the bioRxiv database by keywords, authors, and categories.

OpenAlex Scholarly Database

Accesses and analyzes over 240 million scholarly works, authors, and institutions via the OpenAlex API for automated scientific discovery.

TorchDrug for Molecular Science

Empowers Claude to perform graph-based drug discovery, molecular property prediction, and protein modeling using the TorchDrug framework.