Data Science & ML Claudeスキル

TorchDrug Science Toolkit

Provides an advanced machine learning framework for drug discovery, molecular property prediction, and protein modeling using PyTorch.

Matplotlib Visualization

Generates high-quality static, animated, and interactive visualizations for data analysis and scientific publication.

Phylogenetic Tree Analysis (ETE)

Manipulates, analyzes, and visualizes phylogenetic and hierarchical tree structures with biological database integration.

PathML Computational Pathology

Analyzes whole-slide pathology images and multiparametric imaging data using advanced machine learning and spatial graph techniques.

Cosmic Cancer Database Access

Access and query the COSMIC database for somatic mutations, cancer gene census, and mutational signatures to support precision oncology research.

ChEMBL Database Explorer

Accesses and queries the ChEMBL database for bioactive molecules, drug targets, and bioactivity data within medicinal chemistry workflows.

ClinPGx Pharmacogenomics Database

Accesses comprehensive pharmacogenomics data for precision medicine, genotype-guided dosing, and clinical decision support.

ClinVar Database Integration

Queries NCBI ClinVar to retrieve and interpret clinical significance data for human genetic variants.

KEGG Database Analysis

Integrates KEGG REST API access into workflows for biological pathway analysis, gene mapping, and molecular interaction research.

ZINC Database

Searches and retrieves information from the ZINC database of 230M+ purchasable compounds for drug discovery and virtual screening.

Scikit-Survival Analyst

Performs comprehensive survival analysis and time-to-event modeling using the scikit-survival library in Python.

STRING Protein Interaction Database

Accesses the STRING database to analyze protein-protein interaction networks and perform functional enrichment for systems biology.

UniProt Database Integration

Enables direct REST API access to UniProt for protein searching, FASTA sequence retrieval, and cross-database identifier mapping.

ReasoningBank Agent Memory & Adaptive Learning

Enhances AI agents with high-performance adaptive learning and vector-based memory distillation using AgentDB.

AI Swarm Orchestration

Orchestrates multi-agent AI swarms with dynamic topologies and parallel execution for complex distributed tasks.

Scientific Computing Resource Detector

Detects hardware resources and provides strategic recommendations for optimal scientific computing and data processing.

Plotly Data Visualization

Generates interactive, publication-quality scientific and statistical charts using the Plotly Python library.

Aeon Time Series Machine Learning

Implements advanced time series machine learning workflows for classification, forecasting, and anomaly detection using scikit-learn compatible APIs.

LatchBio Bioinformatics Integration

Builds and deploys serverless bioinformatics workflows using the Latch SDK and cloud infrastructure.

Reactome Biological Pathways & Analysis

Queries the Reactome database to perform biological pathway analysis, gene-pathway mapping, and expression enrichment for systems biology research.

Pymoo Optimization Assistant

Solves complex single, multi, and many-objective optimization problems using evolutionary algorithms and Pareto-optimal analysis.

AlphaFold Database Integration

Accesses and analyzes over 200 million AI-predicted protein structures from the AlphaFold DB for structural biology and drug discovery.

Academic Literature Review

Conducts systematic, multi-database academic literature reviews with automated citation verification and professional formatting.

Scholar Evaluation Framework

Systematically evaluates research papers, literature reviews, and academic methodologies using the ScholarEval framework to ensure scientific rigor and novelty.

Ensembl Genome Database Integration

Accesses the Ensembl REST API to retrieve genomic sequences, gene annotations, and variant data for over 250 species.

RDKit Cheminformatics

Provides comprehensive cheminformatics capabilities for molecular analysis, manipulation, and drug discovery workflows.

Scientific Brainstorming

Facilitates collaborative research ideation by generating hypotheses, identifying research gaps, and exploring interdisciplinary connections for scientific problem-solving.

ClinicalTrials.gov Database

Accesses the ClinicalTrials.gov API v2 to search, filter, and export global clinical research data for medical analysis.

Metabolomics Workbench Database

Integrates with the NIH Metabolomics Workbench REST API to query metabolite data, standardized nomenclature, and experimental studies for biomarker discovery.

Vaex Big Data Analysis

Processes and analyzes massive tabular datasets with billions of rows using out-of-core DataFrame operations and lazy evaluation.