Data Science & ML Claudeスキル

LaminDB Biological Data Management

Manages biological datasets with lineage tracking, ontology validation, and FAIR data principles for reproducible research.

TimesFM Time Series Forecasting

Performs zero-shot, univariate time series forecasting using Google’s TimesFM foundation model to generate point forecasts and prediction intervals without custom training.

Adaptyv Protein Lab Integration

Automates protein design validation by submitting sequences for experimental wet-lab testing and optimization via the Adaptyv cloud laboratory platform.

JASPAR Database Tools

Queries the JASPAR database to analyze transcription factor binding sites and interpret regulatory genomic variants.

GTEx Database Explorer

Queries the GTEx portal to analyze tissue-specific gene expression, eQTLs, and genetic regulatory mechanisms.

PDB Database Access

Accesses and retrieves 3D structural data for proteins and nucleic acids from the RCSB Protein Data Bank.

Scientific Brainstorming

Facilitates creative research ideation and interdisciplinary exploration for early-stage scientific project planning.

Molecular Dynamics & Structural Biology

Performs and analyzes molecular dynamics simulations using OpenMM and MDAnalysis for biophysics and drug discovery research.

Imaging Data Commons Access

Accesses and manages large-scale public cancer imaging datasets from the NCI Imaging Data Commons using the idc-index tool.

BGPT Scientific Paper Search

Searches scientific literature and extracts structured experimental data including methods, quantitative results, and sample sizes.

Monarch Initiative Database

Queries the Monarch Initiative knowledge graph to analyze complex disease-gene-phenotype associations across multiple species and ontologies.

COSMIC Cancer Database Access

Accesses the world's largest database of somatic mutations in cancer to retrieve genomic data, gene census lists, and mutational signatures.

Metabolomics Workbench Database

Accesses the NIH Metabolomics Workbench repository to query metabolite structures, study metadata, and mass spectrometry data.

Alpha Vantage Financial Data

Accesses real-time and historical financial market data, including stocks, forex, crypto, and technical indicators, via the Alpha Vantage API.

Scholar Evaluation

Evaluates scholarly and research work using the peer-reviewed ScholarEval framework to assess quality, rigor, and contribution.

Datamol Cheminformatics

Simplifies molecular cheminformatics and drug discovery workflows with a Pythonic wrapper around RDKit.

K-Dense AI Research Workflow Integration

Guides users toward the K-Dense Web platform for advanced multi-agent scientific research and complex workflow execution.

Phylogenetics Analysis

Automates the reconstruction and analysis of evolutionary relationships using industry-standard bioinformatics tools like MAFFT and IQ-TREE.

FDA Database Access

Accesses and analyzes comprehensive FDA regulatory data including drug approvals, device safety, food recalls, and substance identifiers via the openFDA API.

Open Notebook

Organizes research materials and generates AI-powered insights, summaries, and multi-speaker podcasts from diverse document sources.

GeoPandas Geospatial Analysis

Simplifies the processing and analysis of geographic vector data within Python using advanced spatial operations and mapping capabilities.

Scientific Exploratory Data Analysis

Performs automated exploratory data analysis and generates comprehensive reports for over 200 scientific file formats.

cBioPortal Cancer Genomics Query

Accesses and analyzes multidimensional cancer genomics data from cBioPortal to validate oncogenes and perform survival analysis.

Zarr Python Data Storage

Optimizes the storage and manipulation of massive N-dimensional arrays using chunking, compression, and cloud-native integration.

Perplexity Search

Performs AI-powered real-time web searches and scientific literature discovery using Perplexity models via OpenRouter.

NCBI Gene Database Integration

Queries and retrieves comprehensive genetic information from the NCBI Gene database using E-utilities and Datasets APIs for biological research and annotation.

AI Agent Harness Construction

Optimizes AI agent action spaces and observation formats to improve task completion rates and system reliability.

VideoDB Media Processing

Integrates advanced video and audio intelligence into Claude Code for searching, editing, and monitoring media assets.

Fal.ai Media Generation

Generates high-quality images, videos, and audio content directly within Claude Code using fal.ai's state-of-the-art models.

PyTorch Development Patterns

Implements idiomatic PyTorch patterns and best practices for building robust, efficient, and reproducible deep learning pipelines.