Data Science & ML Claudeスキル

Open Targets Database

Queries the Open Targets Platform to identify therapeutic drug targets and analyze disease-target associations using human genetics and omics data.

FDA Database Access

Accesses and analyzes comprehensive FDA regulatory data for drugs, medical devices, and food safety through the openFDA API.

Clinical Decision Support Documenter

Generates publication-ready clinical decision support documents and biomarker-stratified cohort analyses for pharmaceutical and clinical research.

Ensembl Genome Database Access

Facilitates automated queries to the Ensembl REST API for gene annotation, sequence retrieval, and comparative genomic analysis across 250+ species.

PyTorch Geometric (PyG) Graph Learning

Develop and train Graph Neural Networks using PyTorch Geometric for node classification, link prediction, and molecular modeling.

ClinicalTrials.gov Search & Analytics

Facilitates programmatic access to the ClinicalTrials.gov API v2 to search, filter, and export global clinical study data for research and patient matching.

Scientific Brainstorming

Facilitates collaborative research ideation and hypothesis generation for scientists and academic researchers.

Scientific Visualization

Generates publication-quality scientific figures and multi-panel layouts using Python libraries while adhering to journal-specific standards.

DNAnexus Integration

Streamlines genomics pipeline development and data management on the DNAnexus cloud platform using the dxpy Python SDK.

GWAS Catalog Database Search

Queries the NHGRI-EBI GWAS Catalog for SNP-trait associations, genetic variants, and summary statistics to support genetic epidemiology and polygenic risk score development.

LatchBio Bioinformatics Integration

Builds and deploys serverless bioinformatics workflows using the Latch SDK and Registry.

Metabolomics Workbench Database

Accesses the NIH Metabolomics Workbench API to retrieve metabolite structures, study metadata, and standardized chemical nomenclature for biomarker discovery.

Statsmodels Statistical Modeling

Performs rigorous statistical modeling, econometric analysis, and time series forecasting using the Statsmodels library.

Scientific Hypothesis Generator

Formulates testable, evidence-based scientific hypotheses and experimental designs from observations and literature.

PubChem Database Explorer

Queries the PubChem database to retrieve chemical properties, perform structure searches, and access bioactivity data for over 110 million compounds.

AlphaFold Database Tools

Accesses and analyzes over 200 million AI-predicted protein structures for bioinformatics and structural biology research.

ChEMBL Database & Drug Discovery

Queries the ChEMBL database to retrieve bioactive molecule data, drug targets, and bioactivity measurements for medicinal chemistry.

BRENDA Enzyme Database

Accesses the comprehensive BRENDA enzyme database to retrieve kinetic parameters, biochemical reactions, and metabolic pathway data.

COSMIC Cancer Genomics

Accesses and queries the Catalogue of Somatic Mutations in Cancer (COSMIC) to retrieve high-quality genomic data for precision oncology and cancer research.

Pysam Genomic Toolkit

Reads, manipulates, and writes genomic datasets including BAM, VCF, and FASTA files using a Pythonic interface to htslib.

Benchling Integration

Automates R&D data management by integrating Claude with the Benchling platform for biological entity tracking, inventory control, and lab notebook documentation.

European Nucleotide Archive (ENA) Database Access

Accesses the European Nucleotide Archive (ENA) to retrieve DNA/RNA sequences, raw reads, and genome assemblies for bioinformatics pipelines.

Seaborn Statistical Visualization

Generates publication-quality statistical graphics and complex data visualizations using a high-level, dataset-oriented Python interface.

RDKit Cheminformatics Toolkit

Facilitates advanced molecular analysis and cheminformatics workflows including property calculation, substructure searching, and 3D coordinate generation.

Opentrons Lab Automation

Automates laboratory liquid handling workflows by writing Python-based Protocol API v2 scripts for Opentrons Flex and OT-2 robots.

UniProt Protein Database

Provides direct REST API access to UniProt for protein sequence retrieval, identifier mapping, and comprehensive functional annotation searches.

PyOpenMS Mass Spectrometry Analysis

Analyzes mass spectrometry data using Python bindings for OpenMS to process complex proteomics and metabolomics workflows.

PyTDC Therapeutics AI

Facilitates drug discovery and therapeutic machine learning with curated datasets, ADMET benchmarks, and molecular optimization oracles.

Scientific Research Lookup

Conducts real-time academic research, literature reviews, and technical documentation lookups with automated model selection and proper citations.

NCBI GEO Genomics Assistant

Accesses and processes NCBI Gene Expression Omnibus (GEO) data for transcriptomics and functional genomics research.