Data Science & ML Claudeスキル

DNAnexus Genomics Integration

Streamlines genomics pipeline development and data management on the DNAnexus cloud platform using the dxpy Python SDK.

AlphaFold Database Integration

Accesses and analyzes over 200 million AI-predicted protein structures from the AlphaFold DB for structural biology and drug discovery.

Bioinformatics & Genomic Data (gget)

Provides a unified interface for rapid bioinformatics queries across 20+ genomic databases including Ensembl, AlphaFold, and NCBI.

Academic Literature Review

Conducts systematic, multi-database academic literature reviews with automated citation verification and professional formatting.

Scientific Hypothesis Generator

Generates testable, evidence-based scientific hypotheses and experimental designs across multiple research domains.

Scholar Evaluation Framework

Systematically evaluates research papers, literature reviews, and academic methodologies using the ScholarEval framework to ensure scientific rigor and novelty.

Qiskit Quantum Computing

Builds, optimizes, and executes quantum circuits and algorithms across various hardware providers and simulators.

Ensembl Genome Database Integration

Accesses the Ensembl REST API to retrieve genomic sequences, gene annotations, and variant data for over 250 species.

RDKit Cheminformatics

Provides comprehensive cheminformatics capabilities for molecular analysis, manipulation, and drug discovery workflows.

Scientific Brainstorming

Facilitates collaborative research ideation by generating hypotheses, identifying research gaps, and exploring interdisciplinary connections for scientific problem-solving.

ClinicalTrials.gov Database

Accesses the ClinicalTrials.gov API v2 to search, filter, and export global clinical research data for medical analysis.

Metabolomics Workbench Database

Integrates with the NIH Metabolomics Workbench REST API to query metabolite data, standardized nomenclature, and experimental studies for biomarker discovery.

Gtars Genomic Analysis

Performs high-performance genomic interval analysis, overlap detection, and machine learning tokenization using Rust-powered tools.

Vaex Big Data Analysis

Processes and analyzes massive tabular datasets with billions of rows using out-of-core DataFrame operations and lazy evaluation.

Pymatgen Materials Science

Facilitates advanced materials analysis, crystal structure manipulation, and computational workflows using the Python Materials Genomics library.

NeuroKit2 Biosignal Analysis

Processes and analyzes complex physiological data including ECG, EEG, and EDA for scientific research and health applications.

Scientific Critical Thinking

Evaluates scientific research rigor and methodology through systematic analysis of experimental design, statistical validity, and potential biases.

Stable Baselines3 Reinforcement Learning

Implements and optimizes reinforcement learning workflows using Stable Baselines3 to train reliable RL agents and design custom Gym environments.

Statistical Analysis for Research

Performs comprehensive statistical hypothesis testing, regression analysis, and Bayesian modeling with automated assumption checking and APA-style reporting.

Flow Nexus Neural Networks

Trains and deploys complex neural network architectures within distributed E2B sandbox environments using Flow Nexus.

deepTools NGS Analysis

Processes and visualizes high-throughput sequencing data to generate publication-quality genomic insights and quality control reports.

PennyLane Quantum Computing

Develops and optimizes quantum machine learning models and circuits across multiple hardware platforms using automatic differentiation.

DeepChem Molecular ML

Simplifies molecular machine learning workflows for drug discovery, property prediction, and materials science using DeepChem's specialized toolsets.

Molfeat Molecular Featurization

Converts chemical structures into numerical representations for machine learning using over 100 specialized featurizers and pretrained models.

Ericsson RAN Feature Processor

Optimizes Ericsson RAN features through Managed Object intelligence and advanced parameter correlation analysis.

OMERO Microscopy Integration

Manages and analyzes microscopy image data within the OMERO platform using the Python API for scientific workflows.

Cirq Quantum Computing

Builds, simulates, and executes quantum circuits on simulators and hardware providers using Google's open-source Cirq framework.

OpenAlex Academic Literature

Queries and analyzes the OpenAlex database to search scholarly literature, track citations, and perform bibliometric analysis.

ESM Protein Design & Analysis

Empowers protein engineering and biological research through state-of-the-art ESM3 generative models and ESM C embeddings.

Excel Spreadsheet Analysis & Modeling

Automates the creation, editing, and analysis of professional-grade Excel spreadsheets with dynamic formulas and industry-standard financial formatting.