Data Science & ML Claudeスキル

scvi-tools Single-Cell Analysis

Analyzes single-cell omics data using deep generative models and probabilistic inference for batch correction and multimodal integration.

Scikit-Survival Toolkit

Facilitates advanced survival analysis and time-to-event modeling using the scikit-survival library in Python.

Open Targets Database Explorer

Queries the Open Targets Platform to identify and prioritize therapeutic drug targets through systematic data integration.

HMDB Scientific Database

Provides comprehensive access to the Human Metabolome Database for metabolomics research, metabolite identification, and clinical biomarker discovery.

UMAP Dimensionality Reduction

Performs fast, non-linear dimensionality reduction to visualize high-dimensional data and improve clustering performance.

Scanpy Single-Cell Analysis

Performs comprehensive single-cell RNA-seq analysis pipelines including quality control, clustering, and visualization using the Scanpy toolkit.

NCBI GEO Genomics Data Access

Accesses and integrates gene expression and functional genomics data from the NCBI Gene Expression Omnibus (GEO).

DHDNA Cognitive Profiler

Extracts unique cognitive fingerprints and reasoning patterns from text using the Digital Human DNA framework.

deepTools NGS Analysis

Streamlines next-generation sequencing (NGS) data processing, quality control, and publication-quality genomic visualization.

Scientific Slides

Generates visually engaging, research-backed presentation slides for conferences, seminars, and academic defenses.

Dask Parallel Computing

Enables parallel and distributed computing for large-scale data analysis using familiar pandas and NumPy APIs.

PyTorch Geometric (PyG)

Builds and trains high-performance Graph Neural Networks for irregular data structures like social networks and molecular graphs.

Biopython Molecular Biology Toolkit

Powers computational molecular biology tasks including sequence analysis, file parsing, and programmatic NCBI database access.

LabArchives Integration

Automates research documentation and data management by integrating the LabArchives electronic lab notebook platform via its REST API.

Phylogenetics & Evolutionary Analysis

Builds and analyzes phylogenetic trees to infer evolutionary relationships between biological sequences using industry-standard bioinformatics tools.

PyOpenMS Mass Spectrometry Analysis

Enables comprehensive mass spectrometry data processing for proteomics and metabolomics workflows within Claude Code.

Scientific Critical Thinking

Evaluates scientific rigor and methodology to ensure research validity and identify potential biases using established evidence frameworks.

PDB Structure Database

Accesses and analyzes 3D macromolecular structures from the RCSB Protein Data Bank for structural biology and drug discovery.

Scikit-learn ML Toolkit

Builds, evaluates, and deploys classical machine learning models using the industry-standard scikit-learn library.

NetworkX Graph Analysis

Analyzes and visualizes complex networks and graph data structures using the comprehensive Python NetworkX library.

scikit-bio Bioinformatics

Performs comprehensive bioinformatics analysis including sequence manipulation, phylogenetics, and microbial ecology statistics.

DrugBank Database Explorer

Accesses and analyzes comprehensive pharmaceutical data from DrugBank for drug discovery, pharmacology research, and interaction analysis.

Gtars Genomic Analysis Toolkit

Processes and analyzes high-performance genomic interval data using Rust-powered algorithms and Python bindings.

LatchBio Bioinformatics Integration

Streamlines the development, deployment, and management of serverless bioinformatics pipelines using the LatchBio SDK and cloud infrastructure.

Aeon Time Series Machine Learning

Performs advanced time series machine learning tasks including classification, forecasting, and anomaly detection using a scikit-learn compatible interface.

Monarch Disease & Gene Database

Queries the Monarch Initiative knowledge graph to explore complex disease-gene-phenotype associations across multiple species.

Adaptyv Cloud Lab

Automates protein sequence optimization and experimental validation through cloud-based laboratory assays and API integration.

Rowan Quantum Chemistry

Automates cloud-based quantum chemistry workflows, molecular property predictions, and protein-ligand modeling via a unified Python API.

ChEMBL Database & Drug Discovery

Provides programmatic access to the ChEMBL database for bioactive molecule research and medicinal chemistry.

Clinical Decision Support

Generates publication-ready clinical decision support documents and biomarker-stratified cohort analyses for pharmaceutical and clinical research.